miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22292 3' -55 NC_005045.1 + 4138 0.68 0.50494
Target:  5'- gAUGCAGUAgcaggCGCCUgCCAgcaggccgAGGCAGCa -3'
miRNA:   3'- -UGCGUUAUg----GCGGA-GGUa-------UCCGUCGg -5'
22292 3' -55 NC_005045.1 + 28379 0.68 0.48371
Target:  5'- gGCGgAcAUGCCGCCagcggCCAauaguGGUAGCCa -3'
miRNA:   3'- -UGCgU-UAUGGCGGa----GGUau---CCGUCGG- -5'
22292 3' -55 NC_005045.1 + 9285 0.67 0.575236
Target:  5'- cACGCAugaccuguugauCCGCa-CCGUugAGGCGGCCu -3'
miRNA:   3'- -UGCGUuau---------GGCGgaGGUA--UCCGUCGG- -5'
22292 3' -55 NC_005045.1 + 40960 0.65 0.661074
Target:  5'- uCGCAAUACuCGUCcuugCUGU-GGUAGCCc -3'
miRNA:   3'- uGCGUUAUG-GCGGa---GGUAuCCGUCGG- -5'
22292 3' -55 NC_005045.1 + 4434 0.71 0.357902
Target:  5'- cCGCAGUGCUGCCcgugguuaUCCAUGacgacGGCccuGCCa -3'
miRNA:   3'- uGCGUUAUGGCGG--------AGGUAU-----CCGu--CGG- -5'
22292 3' -55 NC_005045.1 + 15157 0.65 0.661074
Target:  5'- gACGCcgacggccCCGCCUaCGUGGcuGCGGCCa -3'
miRNA:   3'- -UGCGuuau----GGCGGAgGUAUC--CGUCGG- -5'
22292 3' -55 NC_005045.1 + 28156 0.66 0.627122
Target:  5'- aGCGCugugGUGCCGCUgCCGgcacGGGUcgauauGGCCa -3'
miRNA:   3'- -UGCGu---UAUGGCGGaGGUa---UCCG------UCGG- -5'
22292 3' -55 NC_005045.1 + 30093 0.71 0.366735
Target:  5'- aGCGCGGU-UCGCaugaUCC--AGGCGGCCa -3'
miRNA:   3'- -UGCGUUAuGGCGg---AGGuaUCCGUCGG- -5'
22292 3' -55 NC_005045.1 + 2059 0.7 0.394124
Target:  5'- aACGCAAaGCCGCCaaggcucgCCGcgacaAGGCAcGCCg -3'
miRNA:   3'- -UGCGUUaUGGCGGa-------GGUa----UCCGU-CGG- -5'
22292 3' -55 NC_005045.1 + 33666 0.7 0.413104
Target:  5'- cGCGUAGacccgaaccUGCCGCCgaCCAUcaAGGCccuGGCCg -3'
miRNA:   3'- -UGCGUU---------AUGGCGGa-GGUA--UCCG---UCGG- -5'
22292 3' -55 NC_005045.1 + 32633 0.7 0.422803
Target:  5'- -gGCAgcGUACCGCgUUCCGUguggugcaGGGCGGCg -3'
miRNA:   3'- ugCGU--UAUGGCG-GAGGUA--------UCCGUCGg -5'
22292 3' -55 NC_005045.1 + 22159 0.7 0.422803
Target:  5'- cGCGCAG-GCCGCaaccugUCCGguucGGGCAGCg -3'
miRNA:   3'- -UGCGUUaUGGCGg-----AGGUa---UCCGUCGg -5'
22292 3' -55 NC_005045.1 + 17650 0.69 0.432637
Target:  5'- gAUGCAGUggGCCGCCgaggUCAaGGGCuaccuGCCu -3'
miRNA:   3'- -UGCGUUA--UGGCGGa---GGUaUCCGu----CGG- -5'
22292 3' -55 NC_005045.1 + 16534 0.69 0.473256
Target:  5'- -aGCAAUcCCGCUUCgGUgAGGUgAGCCg -3'
miRNA:   3'- ugCGUUAuGGCGGAGgUA-UCCG-UCGG- -5'
22292 3' -55 NC_005045.1 + 6152 0.68 0.537504
Target:  5'- uGCGguAUACCuuccgcGCUUCCGUggcgaAGGCugaGGCCg -3'
miRNA:   3'- -UGCguUAUGG------CGGAGGUA-----UCCG---UCGG- -5'
22292 3' -55 NC_005045.1 + 2436 0.67 0.548522
Target:  5'- gGCGCuguAUGaaGCCaugCCuaauGGCAGCCg -3'
miRNA:   3'- -UGCGu--UAUggCGGa--GGuau-CCGUCGG- -5'
22292 3' -55 NC_005045.1 + 29615 0.67 0.581964
Target:  5'- uGCGCGAcGCCgGCUUCCu--GGaCAGCa -3'
miRNA:   3'- -UGCGUUaUGG-CGGAGGuauCC-GUCGg -5'
22292 3' -55 NC_005045.1 + 10368 0.67 0.592085
Target:  5'- cGCGCAagucccaccucguGUACgaugagCGCCgcgCCAUGGuccGCAGCCu -3'
miRNA:   3'- -UGCGU-------------UAUG------GCGGa--GGUAUC---CGUCGG- -5'
22292 3' -55 NC_005045.1 + 13237 0.67 0.59772
Target:  5'- gGCGcCAGUACCGCCggggauucuGGCAagcGCCg -3'
miRNA:   3'- -UGC-GUUAUGGCGGagguau---CCGU---CGG- -5'
22292 3' -55 NC_005045.1 + 18488 0.66 0.604493
Target:  5'- gACGCGGUGCUGCC-CgAagAGGCAcgaaucgaccuGCCc -3'
miRNA:   3'- -UGCGUUAUGGCGGaGgUa-UCCGU-----------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.