miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22292 3' -55 NC_005045.1 + 18488 0.66 0.604493
Target:  5'- gACGCGGUGCUGCC-CgAagAGGCAcgaaucgaccuGCCc -3'
miRNA:   3'- -UGCGUUAUGGCGGaGgUa-UCCGU-----------CGG- -5'
22292 3' -55 NC_005045.1 + 13237 0.67 0.59772
Target:  5'- gGCGcCAGUACCGCCggggauucuGGCAagcGCCg -3'
miRNA:   3'- -UGC-GUUAUGGCGGagguau---CCGU---CGG- -5'
22292 3' -55 NC_005045.1 + 10368 0.67 0.592085
Target:  5'- cGCGCAagucccaccucguGUACgaugagCGCCgcgCCAUGGuccGCAGCCu -3'
miRNA:   3'- -UGCGU-------------UAUG------GCGGa--GGUAUC---CGUCGG- -5'
22292 3' -55 NC_005045.1 + 29615 0.67 0.581964
Target:  5'- uGCGCGAcGCCgGCUUCCu--GGaCAGCa -3'
miRNA:   3'- -UGCGUUaUGG-CGGAGGuauCC-GUCGg -5'
22292 3' -55 NC_005045.1 + 2436 0.67 0.548522
Target:  5'- gGCGCuguAUGaaGCCaugCCuaauGGCAGCCg -3'
miRNA:   3'- -UGCGu--UAUggCGGa--GGuau-CCGUCGG- -5'
22292 3' -55 NC_005045.1 + 4993 0.68 0.526563
Target:  5'- aGCGCcAUcCgCGCCgUCCAgucgucGGCAGCCc -3'
miRNA:   3'- -UGCGuUAuG-GCGG-AGGUau----CCGUCGG- -5'
22292 3' -55 NC_005045.1 + 14862 0.68 0.523296
Target:  5'- gGCGCGAcUGCCGCCccugCUGUaccggcugucccgcAGGCAGUg -3'
miRNA:   3'- -UGCGUU-AUGGCGGa---GGUA--------------UCCGUCGg -5'
22292 3' -55 NC_005045.1 + 17912 0.68 0.515706
Target:  5'- gGCGCgAAUACCGCgCcgCCAcccuggaacAGGCGGUCa -3'
miRNA:   3'- -UGCG-UUAUGGCG-Ga-GGUa--------UCCGUCGG- -5'
22292 3' -55 NC_005045.1 + 27259 0.68 0.494273
Target:  5'- cACGCAGUA-CGaCCUCgAUaccaGGGCGGCa -3'
miRNA:   3'- -UGCGUUAUgGC-GGAGgUA----UCCGUCGg -5'
22292 3' -55 NC_005045.1 + 16534 0.69 0.473256
Target:  5'- -aGCAAUcCCGCUUCgGUgAGGUgAGCCg -3'
miRNA:   3'- ugCGUUAuGGCGGAGgUA-UCCG-UCGG- -5'
22292 3' -55 NC_005045.1 + 944 1.11 0.000462
Target:  5'- cACGCAAUACCGCCUCCAUAGGCAGCCu -3'
miRNA:   3'- -UGCGUUAUGGCGGAGGUAUCCGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.