miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22292 3' -55 NC_005045.1 + 18669 0.67 0.544106
Target:  5'- gACGCucGUGCCGCC-CCGcccugugaagcgguUGGGUucgaacaAGCCg -3'
miRNA:   3'- -UGCGu-UAUGGCGGaGGU--------------AUCCG-------UCGG- -5'
22292 3' -55 NC_005045.1 + 6152 0.68 0.537504
Target:  5'- uGCGguAUACCuuccgcGCUUCCGUggcgaAGGCugaGGCCg -3'
miRNA:   3'- -UGCguUAUGG------CGGAGGUA-----UCCG---UCGG- -5'
22292 3' -55 NC_005045.1 + 4993 0.68 0.526563
Target:  5'- aGCGCcAUcCgCGCCgUCCAgucgucGGCAGCCc -3'
miRNA:   3'- -UGCGuUAuG-GCGG-AGGUau----CCGUCGG- -5'
22292 3' -55 NC_005045.1 + 14862 0.68 0.523296
Target:  5'- gGCGCGAcUGCCGCCccugCUGUaccggcugucccgcAGGCAGUg -3'
miRNA:   3'- -UGCGUU-AUGGCGGa---GGUA--------------UCCGUCGg -5'
22292 3' -55 NC_005045.1 + 17912 0.68 0.515706
Target:  5'- gGCGCgAAUACCGCgCcgCCAcccuggaacAGGCGGUCa -3'
miRNA:   3'- -UGCG-UUAUGGCG-Ga-GGUa--------UCCGUCGG- -5'
22292 3' -55 NC_005045.1 + 4138 0.68 0.50494
Target:  5'- gAUGCAGUAgcaggCGCCUgCCAgcaggccgAGGCAGCa -3'
miRNA:   3'- -UGCGUUAUg----GCGGA-GGUa-------UCCGUCGg -5'
22292 3' -55 NC_005045.1 + 27259 0.68 0.494273
Target:  5'- cACGCAGUA-CGaCCUCgAUaccaGGGCGGCa -3'
miRNA:   3'- -UGCGUUAUgGC-GGAGgUA----UCCGUCGg -5'
22292 3' -55 NC_005045.1 + 28379 0.68 0.48371
Target:  5'- gGCGgAcAUGCCGCCagcggCCAauaguGGUAGCCa -3'
miRNA:   3'- -UGCgU-UAUGGCGGa----GGUau---CCGUCGG- -5'
22292 3' -55 NC_005045.1 + 16534 0.69 0.473256
Target:  5'- -aGCAAUcCCGCUUCgGUgAGGUgAGCCg -3'
miRNA:   3'- ugCGUUAuGGCGGAGgUA-UCCG-UCGG- -5'
22292 3' -55 NC_005045.1 + 7717 0.69 0.442604
Target:  5'- aGC-CGAUGCUGCCUUucgcuguacagCAgcGGCAGCCc -3'
miRNA:   3'- -UGcGUUAUGGCGGAG-----------GUauCCGUCGG- -5'
22292 3' -55 NC_005045.1 + 17650 0.69 0.432637
Target:  5'- gAUGCAGUggGCCGCCgaggUCAaGGGCuaccuGCCu -3'
miRNA:   3'- -UGCGUUA--UGGCGGa---GGUaUCCGu----CGG- -5'
22292 3' -55 NC_005045.1 + 22159 0.7 0.422803
Target:  5'- cGCGCAG-GCCGCaaccugUCCGguucGGGCAGCg -3'
miRNA:   3'- -UGCGUUaUGGCGg-----AGGUa---UCCGUCGg -5'
22292 3' -55 NC_005045.1 + 32633 0.7 0.422803
Target:  5'- -gGCAgcGUACCGCgUUCCGUguggugcaGGGCGGCg -3'
miRNA:   3'- ugCGU--UAUGGCG-GAGGUA--------UCCGUCGg -5'
22292 3' -55 NC_005045.1 + 33666 0.7 0.413104
Target:  5'- cGCGUAGacccgaaccUGCCGCCgaCCAUcaAGGCccuGGCCg -3'
miRNA:   3'- -UGCGUU---------AUGGCGGa-GGUA--UCCG---UCGG- -5'
22292 3' -55 NC_005045.1 + 38458 0.7 0.403543
Target:  5'- uGCGCc-UGCCGCauCUCCucgcggAGGCGGUCg -3'
miRNA:   3'- -UGCGuuAUGGCG--GAGGua----UCCGUCGG- -5'
22292 3' -55 NC_005045.1 + 2059 0.7 0.394124
Target:  5'- aACGCAAaGCCGCCaaggcucgCCGcgacaAGGCAcGCCg -3'
miRNA:   3'- -UGCGUUaUGGCGGa-------GGUa----UCCGU-CGG- -5'
22292 3' -55 NC_005045.1 + 40310 0.7 0.384848
Target:  5'- gAUGCucGAUACCGCCaCCG-AGGCGGgCa -3'
miRNA:   3'- -UGCG--UUAUGGCGGaGGUaUCCGUCgG- -5'
22292 3' -55 NC_005045.1 + 30093 0.71 0.366735
Target:  5'- aGCGCGGU-UCGCaugaUCC--AGGCGGCCa -3'
miRNA:   3'- -UGCGUUAuGGCGg---AGGuaUCCGUCGG- -5'
22292 3' -55 NC_005045.1 + 33378 0.71 0.366735
Target:  5'- gGCGCAcgG-CGCCUCC-UGGGCcGUCu -3'
miRNA:   3'- -UGCGUuaUgGCGGAGGuAUCCGuCGG- -5'
22292 3' -55 NC_005045.1 + 4434 0.71 0.357902
Target:  5'- cCGCAGUGCUGCCcgugguuaUCCAUGacgacGGCccuGCCa -3'
miRNA:   3'- uGCGUUAUGGCGG--------AGGUAU-----CCGu--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.