miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22294 3' -55.5 NC_005045.1 + 20288 0.66 0.598917
Target:  5'- cGCU-GCGCAggccaGGGCGGUCAgucccagGugGCUGc -3'
miRNA:   3'- aUGAgUGCGU-----UCCGCCGGU-------UugCGAC- -5'
22294 3' -55.5 NC_005045.1 + 10902 0.66 0.588718
Target:  5'- --aUgGCGgAGGGUguuGGCCGAGCGCUc -3'
miRNA:   3'- augAgUGCgUUCCG---CCGGUUUGCGAc -5'
22294 3' -55.5 NC_005045.1 + 10780 0.66 0.566175
Target:  5'- cGCUCAgGCcgguGGCGGCC--ACGgUGc -3'
miRNA:   3'- aUGAGUgCGuu--CCGCCGGuuUGCgAC- -5'
22294 3' -55.5 NC_005045.1 + 39749 0.67 0.543861
Target:  5'- aUGCUCACGaCGuGGauguacgGGCCAAGCGUg- -3'
miRNA:   3'- -AUGAGUGC-GUuCCg------CCGGUUUGCGac -5'
22294 3' -55.5 NC_005045.1 + 38442 0.67 0.543861
Target:  5'- -cCUCGCG-GAGGCGGUC-GAUGUUGa -3'
miRNA:   3'- auGAGUGCgUUCCGCCGGuUUGCGAC- -5'
22294 3' -55.5 NC_005045.1 + 26416 0.67 0.521842
Target:  5'- gGCgUCACGUAA-GUGGCCGuGugGCUGu -3'
miRNA:   3'- aUG-AGUGCGUUcCGCCGGU-UugCGAC- -5'
22294 3' -55.5 NC_005045.1 + 28694 0.69 0.427842
Target:  5'- gGCUCAgGCuAAGGcCGGCC---UGCUGg -3'
miRNA:   3'- aUGAGUgCG-UUCC-GCCGGuuuGCGAC- -5'
22294 3' -55.5 NC_005045.1 + 2132 0.69 0.427842
Target:  5'- cUugUCGCgGCGAgccuuGGCGGCUuuGCGUUGa -3'
miRNA:   3'- -AugAGUG-CGUU-----CCGCCGGuuUGCGAC- -5'
22294 3' -55.5 NC_005045.1 + 8987 0.69 0.398786
Target:  5'- gGCcCACGUcaAGGGUGGCCA-GCGCa- -3'
miRNA:   3'- aUGaGUGCG--UUCCGCCGGUuUGCGac -5'
22294 3' -55.5 NC_005045.1 + 18599 0.7 0.353262
Target:  5'- cGCuUCACaggGCGGGGCGGCaCGAGCGUc- -3'
miRNA:   3'- aUG-AGUG---CGUUCCGCCG-GUUUGCGac -5'
22294 3' -55.5 NC_005045.1 + 36230 0.71 0.295929
Target:  5'- aUGgUCACGcCAGGGcCGGCCAcGAUGUUGa -3'
miRNA:   3'- -AUgAGUGC-GUUCC-GCCGGU-UUGCGAC- -5'
22294 3' -55.5 NC_005045.1 + 4035 0.74 0.19247
Target:  5'- cGCUCACGCccAGGCGGCgGAACcGCc- -3'
miRNA:   3'- aUGAGUGCGu-UCCGCCGgUUUG-CGac -5'
22294 3' -55.5 NC_005045.1 + 30358 0.75 0.177008
Target:  5'- aACUCGCGCAGGGCcugGGCCGGG-GCa- -3'
miRNA:   3'- aUGAGUGCGUUCCG---CCGGUUUgCGac -5'
22294 3' -55.5 NC_005045.1 + 12459 0.76 0.153248
Target:  5'- gGCUCugGagaaacagggcuuCGAGGCGGCCAAGCuGUUGa -3'
miRNA:   3'- aUGAGugC-------------GUUCCGCCGGUUUG-CGAC- -5'
22294 3' -55.5 NC_005045.1 + 3467 1.07 0.000716
Target:  5'- cUACUCACGCAAGGCGGCCAAACGCUGg -3'
miRNA:   3'- -AUGAGUGCGUUCCGCCGGUUUGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.