miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22294 5' -58 NC_005045.1 + 31674 0.66 0.47528
Target:  5'- aGGCAccgCGUCGAGuUGGCCcUGUacUUGGGc -3'
miRNA:   3'- -UCGUa--GCGGCUC-GCCGGaACG--AACCU- -5'
22294 5' -58 NC_005045.1 + 16459 0.66 0.465087
Target:  5'- cGGcCAUCGCCGcuuuacguuuGGCGGCUgccugccggcGCUUGGc -3'
miRNA:   3'- -UC-GUAGCGGC----------UCGCCGGaa--------CGAACCu -5'
22294 5' -58 NC_005045.1 + 23921 0.66 0.462051
Target:  5'- gGGCAUCgcccgaguccaucaGCCGAccgaugGCGGCCUUGg-UGGc -3'
miRNA:   3'- -UCGUAG--------------CGGCU------CGCCGGAACgaACCu -5'
22294 5' -58 NC_005045.1 + 13260 0.66 0.445048
Target:  5'- uGGCAagCGCCGGGUGGCaCcUGCUa--- -3'
miRNA:   3'- -UCGUa-GCGGCUCGCCG-GaACGAaccu -5'
22294 5' -58 NC_005045.1 + 28970 0.67 0.397166
Target:  5'- cGCAcuccgCGCCGAGCacucuGGCCcgGCU-GGAg -3'
miRNA:   3'- uCGUa----GCGGCUCG-----CCGGaaCGAaCCU- -5'
22294 5' -58 NC_005045.1 + 21582 0.68 0.370072
Target:  5'- cGGCGUCGUCGAGUG-CCggUGCagUGGc -3'
miRNA:   3'- -UCGUAGCGGCUCGCcGGa-ACGa-ACCu -5'
22294 5' -58 NC_005045.1 + 33006 0.68 0.361326
Target:  5'- cGGacaGUUGCCGAccggcggcGCGGUCUUGCUUcaGGGc -3'
miRNA:   3'- -UCg--UAGCGGCU--------CGCCGGAACGAA--CCU- -5'
22294 5' -58 NC_005045.1 + 3566 0.68 0.361326
Target:  5'- aAGCAagGCCGcuCGGCgaUGCUUGcGAa -3'
miRNA:   3'- -UCGUagCGGCucGCCGgaACGAAC-CU- -5'
22294 5' -58 NC_005045.1 + 14355 0.69 0.296633
Target:  5'- --gGUCGuCCGGGCGGCUUUGC--GGGu -3'
miRNA:   3'- ucgUAGC-GGCUCGCCGGAACGaaCCU- -5'
22294 5' -58 NC_005045.1 + 3501 1.09 0.000342
Target:  5'- aAGCAUCGCCGAGCGGCCUUGCUUGGAa -3'
miRNA:   3'- -UCGUAGCGGCUCGCCGGAACGAACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.