miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22295 5' -53.9 NC_005045.1 + 23425 0.66 0.727928
Target:  5'- cGGuAGCUCCGcCGGcugcGGGUGCAGUUCUu- -3'
miRNA:   3'- -UC-UUGGGGU-GCC----UUCACGUCAAGGuc -5'
22295 5' -53.9 NC_005045.1 + 31687 0.66 0.716927
Target:  5'- cGAACCCCACGGuAG-GCAccgcgUCgAGu -3'
miRNA:   3'- uCUUGGGGUGCCuUCaCGUca---AGgUC- -5'
22295 5' -53.9 NC_005045.1 + 3955 0.66 0.694669
Target:  5'- uGAACCaCCACGGAccggauGUGCcacgggccugaAGUUgCCAGc -3'
miRNA:   3'- uCUUGG-GGUGCCUu-----CACG-----------UCAA-GGUC- -5'
22295 5' -53.9 NC_005045.1 + 16963 0.66 0.683437
Target:  5'- cAGGGCCaCCA-GcAGGUGCAGgucgUCCAGc -3'
miRNA:   3'- -UCUUGG-GGUgCcUUCACGUCa---AGGUC- -5'
22295 5' -53.9 NC_005045.1 + 25240 0.67 0.638104
Target:  5'- aAGaAACCCCACaccGAAGUGCGGgguuUCguGg -3'
miRNA:   3'- -UC-UUGGGGUGc--CUUCACGUCa---AGguC- -5'
22295 5' -53.9 NC_005045.1 + 20074 0.67 0.626728
Target:  5'- cGAAgaCCGaGGAAGUGCGGgUCCGGc -3'
miRNA:   3'- uCUUggGGUgCCUUCACGUCaAGGUC- -5'
22295 5' -53.9 NC_005045.1 + 7099 0.69 0.536741
Target:  5'- --cGCCUCGCGGuGGGUGguGcUCCAGc -3'
miRNA:   3'- ucuUGGGGUGCC-UUCACguCaAGGUC- -5'
22295 5' -53.9 NC_005045.1 + 20775 0.69 0.493352
Target:  5'- uGGGACCaCgAUGGAGGauaucCAGUUCCAGg -3'
miRNA:   3'- -UCUUGG-GgUGCCUUCac---GUCAAGGUC- -5'
22295 5' -53.9 NC_005045.1 + 26711 0.71 0.383612
Target:  5'- cGGuGCCCCuggugUGGggGUGCAGUUCa-- -3'
miRNA:   3'- -UCuUGGGGu----GCCuuCACGUCAAGguc -5'
22295 5' -53.9 NC_005045.1 + 36113 0.72 0.347914
Target:  5'- aGGGACUgCuCGGAGGUgaugcaGCGGUUCCAGu -3'
miRNA:   3'- -UCUUGGgGuGCCUUCA------CGUCAAGGUC- -5'
22295 5' -53.9 NC_005045.1 + 4327 0.73 0.330975
Target:  5'- -cGACCUCACGGAAcUGC-GUUCCGGu -3'
miRNA:   3'- ucUUGGGGUGCCUUcACGuCAAGGUC- -5'
22295 5' -53.9 NC_005045.1 + 4115 1.1 0.000803
Target:  5'- gAGAACCCCACGGAAGUGCAGUUCCAGg -3'
miRNA:   3'- -UCUUGGGGUGCCUUCACGUCAAGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.