Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22296 | 3' | -56.9 | NC_005045.1 | + | 14338 | 0.66 | 0.573839 |
Target: 5'- uGCGGguUACCGGCCuGCGGGUucACGUCGc -3' miRNA: 3'- -UGUU--GUGGCUGG-CGCUCGu-UGCGGCa -5' |
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22296 | 3' | -56.9 | NC_005045.1 | + | 37990 | 0.66 | 0.573839 |
Target: 5'- gACGAuCGgCGGCCagaGGGCAGCGCCu- -3' miRNA: 3'- -UGUU-GUgGCUGGcg-CUCGUUGCGGca -5' |
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22296 | 3' | -56.9 | NC_005045.1 | + | 11451 | 0.66 | 0.562909 |
Target: 5'- uCGGC-CCGGCUGCGgaAGCGAUGCUc- -3' miRNA: 3'- uGUUGuGGCUGGCGC--UCGUUGCGGca -5' |
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22296 | 3' | -56.9 | NC_005045.1 | + | 27868 | 0.66 | 0.562909 |
Target: 5'- -aGGCGCCGGCCaCGGGCuguaGCUGa -3' miRNA: 3'- ugUUGUGGCUGGcGCUCGuug-CGGCa -5' |
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22296 | 3' | -56.9 | NC_005045.1 | + | 23983 | 0.66 | 0.562909 |
Target: 5'- gGCAGCuCUGuCCGCuGAGCAAUaCCGa -3' miRNA: 3'- -UGUUGuGGCuGGCG-CUCGUUGcGGCa -5' |
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22296 | 3' | -56.9 | NC_005045.1 | + | 12636 | 0.66 | 0.562909 |
Target: 5'- uACGACGgCGACgGCGA-CAACGCg-- -3' miRNA: 3'- -UGUUGUgGCUGgCGCUcGUUGCGgca -5' |
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22296 | 3' | -56.9 | NC_005045.1 | + | 6735 | 0.66 | 0.562909 |
Target: 5'- cCAGCcggggaGCUGAgUGCGAGUAuCGCCGa -3' miRNA: 3'- uGUUG------UGGCUgGCGCUCGUuGCGGCa -5' |
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22296 | 3' | -56.9 | NC_005045.1 | + | 28459 | 0.66 | 0.562909 |
Target: 5'- uCAugGCCGcuagcuACCGCaAGCAA-GCCGUg -3' miRNA: 3'- uGUugUGGC------UGGCGcUCGUUgCGGCA- -5' |
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22296 | 3' | -56.9 | NC_005045.1 | + | 35439 | 0.66 | 0.552035 |
Target: 5'- cGCAGCcgccACCGGCgauauCGUcAGCGGCGCCGc -3' miRNA: 3'- -UGUUG----UGGCUG-----GCGcUCGUUGCGGCa -5' |
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22296 | 3' | -56.9 | NC_005045.1 | + | 33158 | 0.66 | 0.541226 |
Target: 5'- cACGGCcCUGAgCCGCGuccuGGCGGCGuCCGa -3' miRNA: 3'- -UGUUGuGGCU-GGCGC----UCGUUGC-GGCa -5' |
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22296 | 3' | -56.9 | NC_005045.1 | + | 15881 | 0.66 | 0.541226 |
Target: 5'- -gAACGCCGACUGa---CAACGCCGc -3' miRNA: 3'- ugUUGUGGCUGGCgcucGUUGCGGCa -5' |
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22296 | 3' | -56.9 | NC_005045.1 | + | 30741 | 0.66 | 0.540149 |
Target: 5'- aACGACACCGAgaccaucggaaCCGUccuggccGAGCAGCacaaGCCGc -3' miRNA: 3'- -UGUUGUGGCU-----------GGCG-------CUCGUUG----CGGCa -5' |
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22296 | 3' | -56.9 | NC_005045.1 | + | 40315 | 0.66 | 0.530488 |
Target: 5'- uCGAUACCGccACCgagGCGGGCAAaggcacccuCGCCGUc -3' miRNA: 3'- uGUUGUGGC--UGG---CGCUCGUU---------GCGGCA- -5' |
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22296 | 3' | -56.9 | NC_005045.1 | + | 23204 | 0.66 | 0.530488 |
Target: 5'- uGCcGCGCCGACCcCGAaccaugugcagGUGAUGCCGa -3' miRNA: 3'- -UGuUGUGGCUGGcGCU-----------CGUUGCGGCa -5' |
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22296 | 3' | -56.9 | NC_005045.1 | + | 32093 | 0.66 | 0.530488 |
Target: 5'- uCGGCGCUGGCCGUGcucuGCGGCucgGUCGUg -3' miRNA: 3'- uGUUGUGGCUGGCGCu---CGUUG---CGGCA- -5' |
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22296 | 3' | -56.9 | NC_005045.1 | + | 14904 | 0.66 | 0.519829 |
Target: 5'- cCAGCAUCcGCCGCGAcguuggGCAcUGCCGg -3' miRNA: 3'- uGUUGUGGcUGGCGCU------CGUuGCGGCa -5' |
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22296 | 3' | -56.9 | NC_005045.1 | + | 35960 | 0.66 | 0.519829 |
Target: 5'- cGCuGCGCCGuGCCcUGGGCuuCGCCGa -3' miRNA: 3'- -UGuUGUGGC-UGGcGCUCGuuGCGGCa -5' |
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22296 | 3' | -56.9 | NC_005045.1 | + | 30941 | 0.67 | 0.509255 |
Target: 5'- cGCAACGCgGAUaagcugaaUGCGAuGCGggGCGCCGa -3' miRNA: 3'- -UGUUGUGgCUG--------GCGCU-CGU--UGCGGCa -5' |
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22296 | 3' | -56.9 | NC_005045.1 | + | 13552 | 0.67 | 0.509255 |
Target: 5'- cCGACGCUGcCCGCuacauGAGCgAGCGCCu- -3' miRNA: 3'- uGUUGUGGCuGGCG-----CUCG-UUGCGGca -5' |
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22296 | 3' | -56.9 | NC_005045.1 | + | 5284 | 0.67 | 0.509255 |
Target: 5'- gACGGCuCCaGGCCGcCGAGC-GCGCaCGUc -3' miRNA: 3'- -UGUUGuGG-CUGGC-GCUCGuUGCG-GCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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