miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22296 3' -56.9 NC_005045.1 + 37990 0.66 0.573839
Target:  5'- gACGAuCGgCGGCCagaGGGCAGCGCCu- -3'
miRNA:   3'- -UGUU-GUgGCUGGcg-CUCGUUGCGGca -5'
22296 3' -56.9 NC_005045.1 + 14338 0.66 0.573839
Target:  5'- uGCGGguUACCGGCCuGCGGGUucACGUCGc -3'
miRNA:   3'- -UGUU--GUGGCUGG-CGCUCGu-UGCGGCa -5'
22296 3' -56.9 NC_005045.1 + 23983 0.66 0.562909
Target:  5'- gGCAGCuCUGuCCGCuGAGCAAUaCCGa -3'
miRNA:   3'- -UGUUGuGGCuGGCG-CUCGUUGcGGCa -5'
22296 3' -56.9 NC_005045.1 + 27868 0.66 0.562909
Target:  5'- -aGGCGCCGGCCaCGGGCuguaGCUGa -3'
miRNA:   3'- ugUUGUGGCUGGcGCUCGuug-CGGCa -5'
22296 3' -56.9 NC_005045.1 + 12636 0.66 0.562909
Target:  5'- uACGACGgCGACgGCGA-CAACGCg-- -3'
miRNA:   3'- -UGUUGUgGCUGgCGCUcGUUGCGgca -5'
22296 3' -56.9 NC_005045.1 + 6735 0.66 0.562909
Target:  5'- cCAGCcggggaGCUGAgUGCGAGUAuCGCCGa -3'
miRNA:   3'- uGUUG------UGGCUgGCGCUCGUuGCGGCa -5'
22296 3' -56.9 NC_005045.1 + 11451 0.66 0.562909
Target:  5'- uCGGC-CCGGCUGCGgaAGCGAUGCUc- -3'
miRNA:   3'- uGUUGuGGCUGGCGC--UCGUUGCGGca -5'
22296 3' -56.9 NC_005045.1 + 28459 0.66 0.562909
Target:  5'- uCAugGCCGcuagcuACCGCaAGCAA-GCCGUg -3'
miRNA:   3'- uGUugUGGC------UGGCGcUCGUUgCGGCA- -5'
22296 3' -56.9 NC_005045.1 + 35439 0.66 0.552035
Target:  5'- cGCAGCcgccACCGGCgauauCGUcAGCGGCGCCGc -3'
miRNA:   3'- -UGUUG----UGGCUG-----GCGcUCGUUGCGGCa -5'
22296 3' -56.9 NC_005045.1 + 15881 0.66 0.541226
Target:  5'- -gAACGCCGACUGa---CAACGCCGc -3'
miRNA:   3'- ugUUGUGGCUGGCgcucGUUGCGGCa -5'
22296 3' -56.9 NC_005045.1 + 33158 0.66 0.541226
Target:  5'- cACGGCcCUGAgCCGCGuccuGGCGGCGuCCGa -3'
miRNA:   3'- -UGUUGuGGCU-GGCGC----UCGUUGC-GGCa -5'
22296 3' -56.9 NC_005045.1 + 30741 0.66 0.540149
Target:  5'- aACGACACCGAgaccaucggaaCCGUccuggccGAGCAGCacaaGCCGc -3'
miRNA:   3'- -UGUUGUGGCU-----------GGCG-------CUCGUUG----CGGCa -5'
22296 3' -56.9 NC_005045.1 + 40315 0.66 0.530488
Target:  5'- uCGAUACCGccACCgagGCGGGCAAaggcacccuCGCCGUc -3'
miRNA:   3'- uGUUGUGGC--UGG---CGCUCGUU---------GCGGCA- -5'
22296 3' -56.9 NC_005045.1 + 23204 0.66 0.530488
Target:  5'- uGCcGCGCCGACCcCGAaccaugugcagGUGAUGCCGa -3'
miRNA:   3'- -UGuUGUGGCUGGcGCU-----------CGUUGCGGCa -5'
22296 3' -56.9 NC_005045.1 + 32093 0.66 0.530488
Target:  5'- uCGGCGCUGGCCGUGcucuGCGGCucgGUCGUg -3'
miRNA:   3'- uGUUGUGGCUGGCGCu---CGUUG---CGGCA- -5'
22296 3' -56.9 NC_005045.1 + 35960 0.66 0.519829
Target:  5'- cGCuGCGCCGuGCCcUGGGCuuCGCCGa -3'
miRNA:   3'- -UGuUGUGGC-UGGcGCUCGuuGCGGCa -5'
22296 3' -56.9 NC_005045.1 + 14904 0.66 0.519829
Target:  5'- cCAGCAUCcGCCGCGAcguuggGCAcUGCCGg -3'
miRNA:   3'- uGUUGUGGcUGGCGCU------CGUuGCGGCa -5'
22296 3' -56.9 NC_005045.1 + 13552 0.67 0.509255
Target:  5'- cCGACGCUGcCCGCuacauGAGCgAGCGCCu- -3'
miRNA:   3'- uGUUGUGGCuGGCG-----CUCG-UUGCGGca -5'
22296 3' -56.9 NC_005045.1 + 30941 0.67 0.509255
Target:  5'- cGCAACGCgGAUaagcugaaUGCGAuGCGggGCGCCGa -3'
miRNA:   3'- -UGUUGUGgCUG--------GCGCU-CGU--UGCGGCa -5'
22296 3' -56.9 NC_005045.1 + 5284 0.67 0.509255
Target:  5'- gACGGCuCCaGGCCGcCGAGC-GCGCaCGUc -3'
miRNA:   3'- -UGUUGuGG-CUGGC-GCUCGuUGCG-GCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.