Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22298 | 3' | -57 | NC_005045.1 | + | 28504 | 0.66 | 0.525083 |
Target: 5'- aGGCCAAGCgccaggggaUGCUagccGGCG-GAAGcGCCGa -3' miRNA: 3'- -CCGGUUCG---------ACGAc---CUGCaCUUC-CGGU- -5' |
|||||||
22298 | 3' | -57 | NC_005045.1 | + | 15857 | 0.66 | 0.535888 |
Target: 5'- aGGCCGAGgUGCugUGGAUGcgccGAAcGCCGa -3' miRNA: 3'- -CCGGUUCgACG--ACCUGCa---CUUcCGGU- -5' |
|||||||
22298 | 3' | -57 | NC_005045.1 | + | 33308 | 0.66 | 0.540233 |
Target: 5'- cGCCcgugAAGgUGCUGGcuuCGUGAaccgguucuucagugAGGCCGa -3' miRNA: 3'- cCGG----UUCgACGACCu--GCACU---------------UCCGGU- -5' |
|||||||
22298 | 3' | -57 | NC_005045.1 | + | 26692 | 0.65 | 0.543498 |
Target: 5'- cGGCCuuGCUGCcgGGAgucggugccccuggUGUGggGGUg- -3' miRNA: 3'- -CCGGuuCGACGa-CCU--------------GCACuuCCGgu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home