miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22299 5' -53.7 NC_005045.1 + 18099 0.66 0.713233
Target:  5'- aGGGCCUcUUcGUGGGCgaucugcuGCUGUAUCa -3'
miRNA:   3'- gCCCGGAuAA-CGCUCGau------CGGUAUGG- -5'
22299 5' -53.7 NC_005045.1 + 11876 0.66 0.713233
Target:  5'- aGGGCCUcgcaGCGcuccAGgUAGCCAgcCCa -3'
miRNA:   3'- gCCCGGAuaa-CGC----UCgAUCGGUauGG- -5'
22299 5' -53.7 NC_005045.1 + 5818 0.66 0.702099
Target:  5'- -cGGCCUG--GCacaAGCUGGCCGcUACCc -3'
miRNA:   3'- gcCCGGAUaaCGc--UCGAUCGGU-AUGG- -5'
22299 5' -53.7 NC_005045.1 + 34312 0.66 0.690893
Target:  5'- gCGGGCCaa-UGCuGAGC-GGCCcgACa -3'
miRNA:   3'- -GCCCGGauaACG-CUCGaUCGGuaUGg -5'
22299 5' -53.7 NC_005045.1 + 19477 0.67 0.66831
Target:  5'- cCGGGCCUucgGCGAgggcgcGCUggaAGUCGUcCCa -3'
miRNA:   3'- -GCCCGGAuaaCGCU------CGA---UCGGUAuGG- -5'
22299 5' -53.7 NC_005045.1 + 17882 0.68 0.600052
Target:  5'- aGGGCCaccucgGCG-GC-GGCCAUugCa -3'
miRNA:   3'- gCCCGGauaa--CGCuCGaUCGGUAugG- -5'
22299 5' -53.7 NC_005045.1 + 40333 0.68 0.600052
Target:  5'- gGcGGCCc-UUGCGAcGCUcccGGCcCAUGCCg -3'
miRNA:   3'- gC-CCGGauAACGCU-CGA---UCG-GUAUGG- -5'
22299 5' -53.7 NC_005045.1 + 26820 0.7 0.478919
Target:  5'- gGGGCCUuggUG-GAGCcggUGGCCAUgacagcGCCg -3'
miRNA:   3'- gCCCGGAua-ACgCUCG---AUCGGUA------UGG- -5'
22299 5' -53.7 NC_005045.1 + 5131 0.72 0.353262
Target:  5'- cCGGGCCUAUUaCGuGCgGGCCuUACUc -3'
miRNA:   3'- -GCCCGGAUAAcGCuCGaUCGGuAUGG- -5'
22299 5' -53.7 NC_005045.1 + 20050 0.77 0.187189
Target:  5'- aGGGCCUua-GCGAGCcgcuggAGCCAUuCCa -3'
miRNA:   3'- gCCCGGAuaaCGCUCGa-----UCGGUAuGG- -5'
22299 5' -53.7 NC_005045.1 + 30506 0.67 0.683011
Target:  5'- cCGGGCgaccaucgacgagGCGAacugGCUGGCCAgcgACCg -3'
miRNA:   3'- -GCCCGgauaa--------CGCU----CGAUCGGUa--UGG- -5'
22299 5' -53.7 NC_005045.1 + 16162 0.66 0.713233
Target:  5'- aCGGGCUUggUGCGGGgUGuCCugcACCg -3'
miRNA:   3'- -GCCCGGAuaACGCUCgAUcGGua-UGG- -5'
22299 5' -53.7 NC_005045.1 + 34482 0.66 0.690893
Target:  5'- cCGGcGUgUAUcagcuUGCuGAGCUGGCCAcgaugGCCc -3'
miRNA:   3'- -GCC-CGgAUA-----ACG-CUCGAUCGGUa----UGG- -5'
22299 5' -53.7 NC_005045.1 + 5094 1.13 0.000479
Target:  5'- cCGGGCCUAUUGCGAGCUAGCCAUACCa -3'
miRNA:   3'- -GCCCGGAUAACGCUCGAUCGGUAUGG- -5'
22299 5' -53.7 NC_005045.1 + 7257 0.67 0.650134
Target:  5'- uCGaGGCCcgagGCGGGCUgcGGCCuuugugggaggaaugGUACCa -3'
miRNA:   3'- -GC-CCGGauaaCGCUCGA--UCGG---------------UAUGG- -5'
22299 5' -53.7 NC_005045.1 + 32159 0.67 0.645581
Target:  5'- uCGGGUaUGUUGCuGGGCUGG--AUGCCg -3'
miRNA:   3'- -GCCCGgAUAACG-CUCGAUCggUAUGG- -5'
22299 5' -53.7 NC_005045.1 + 33902 0.68 0.611416
Target:  5'- -uGGCCUGgacCGGGCUGacGCCgAUACCa -3'
miRNA:   3'- gcCCGGAUaacGCUCGAU--CGG-UAUGG- -5'
22299 5' -53.7 NC_005045.1 + 29819 0.68 0.600052
Target:  5'- aGGGCCgcuggaGCGAuGCUcaGGCCAUcucguucaugACCa -3'
miRNA:   3'- gCCCGGauaa--CGCU-CGA--UCGGUA----------UGG- -5'
22299 5' -53.7 NC_005045.1 + 25513 0.68 0.588718
Target:  5'- -cGGCCUGggggUGCGAGau-GCCAacACCg -3'
miRNA:   3'- gcCCGGAUa---ACGCUCgauCGGUa-UGG- -5'
22299 5' -53.7 NC_005045.1 + 32317 0.68 0.577422
Target:  5'- uCGGcGCCUAcUGUaGGGCUgccagaaguAGCCAUgACCg -3'
miRNA:   3'- -GCC-CGGAUaACG-CUCGA---------UCGGUA-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.