miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
223 3' -52.9 AC_000008.1 + 11132 0.66 0.729841
Target:  5'- aCC-GcgUCAGGAGGggCGACauCCGCGg -3'
miRNA:   3'- -GGuCuaAGUCCUCUa-GUUGgcGGCGC- -5'
223 3' -52.9 AC_000008.1 + 18783 0.66 0.718795
Target:  5'- gCCAGA----GGAGcugcUgAGCCGCCGCGc -3'
miRNA:   3'- -GGUCUaaguCCUCu---AgUUGGCGGCGC- -5'
223 3' -52.9 AC_000008.1 + 18065 0.67 0.707655
Target:  5'- aUCAGuggaauaAGGAGGggCAggauACCGCCGCGc -3'
miRNA:   3'- -GGUCuaag---UCCUCUa-GU----UGGCGGCGC- -5'
223 3' -52.9 AC_000008.1 + 8635 0.67 0.685149
Target:  5'- -aGGGggCAGGGGcacGUCGgcGCCGCgCGCGg -3'
miRNA:   3'- ggUCUaaGUCCUC---UAGU--UGGCG-GCGC- -5'
223 3' -52.9 AC_000008.1 + 17265 0.67 0.673807
Target:  5'- gCGGAUgccgcggugCAGGcGGUCGcuGCgGCCGCGu -3'
miRNA:   3'- gGUCUAa--------GUCCuCUAGU--UGgCGGCGC- -5'
223 3' -52.9 AC_000008.1 + 26088 0.67 0.67267
Target:  5'- cCCAGuccggCgAGGAGcUCAacccaauccccccGCCGCCGCa -3'
miRNA:   3'- -GGUCuaa--G-UCCUCuAGU-------------UGGCGGCGc -5'
223 3' -52.9 AC_000008.1 + 26797 0.68 0.651009
Target:  5'- gCAGcagCAGGAGGagGAgCGCUGCGu -3'
miRNA:   3'- gGUCuaaGUCCUCUagUUgGCGGCGC- -5'
223 3' -52.9 AC_000008.1 + 27050 0.69 0.582516
Target:  5'- cUCAGGagacgugCAGGAGAUUuugcgccaGGCCGCCGUc -3'
miRNA:   3'- -GGUCUaa-----GUCCUCUAG--------UUGGCGGCGc -5'
223 3' -52.9 AC_000008.1 + 21648 0.7 0.498237
Target:  5'- gCGGGUcCAGGGGAgcaUCGaagggagaacccagcGCCGCCGCc -3'
miRNA:   3'- gGUCUAaGUCCUCU---AGU---------------UGGCGGCGc -5'
223 3' -52.9 AC_000008.1 + 16315 0.78 0.178242
Target:  5'- cCCAGGUcCAGGcGAcgagCGGCCGCCGCa -3'
miRNA:   3'- -GGUCUAaGUCCuCUa---GUUGGCGGCGc -5'
223 3' -52.9 AC_000008.1 + 27166 1.11 0.000876
Target:  5'- gCCAGAUUCAGGAGAUCAACCGCCGCGu -3'
miRNA:   3'- -GGUCUAAGUCCUCUAGUUGGCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.