miRNA display CGI


Results 1 - 20 of 24 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2230 3' -53.4 NC_001405.1 + 9990 0.66 0.669636
Target:  5'- uCGCuacGGcgGCGGCGgaguuuGGCCGUAggUGGCg -3'
miRNA:   3'- uGCGu--CCa-CGUCGU------CCGGUAUa-AUCG- -5'
2230 3' -53.4 NC_001405.1 + 13956 0.66 0.669636
Target:  5'- gACGaCGGGUG-GGCGGGCgCGggccgGGCa -3'
miRNA:   3'- -UGC-GUCCACgUCGUCCG-GUauaa-UCG- -5'
2230 3' -53.4 NC_001405.1 + 26075 0.66 0.668471
Target:  5'- gACGCAGGcgGUaagcuccgcauuuGGCGGGCgGgAUUGGUc -3'
miRNA:   3'- -UGCGUCCa-CG-------------UCGUCCGgUaUAAUCG- -5'
2230 3' -53.4 NC_001405.1 + 12150 0.66 0.657971
Target:  5'- cGCGCccuGGagGCAGCugGGGCCGgaccugGGCu -3'
miRNA:   3'- -UGCGu--CCa-CGUCG--UCCGGUauaa--UCG- -5'
2230 3' -53.4 NC_001405.1 + 3847 0.66 0.657971
Target:  5'- gGCGguGGcUGCAGC-GGCUgaAgcGGCg -3'
miRNA:   3'- -UGCguCC-ACGUCGuCCGGuaUaaUCG- -5'
2230 3' -53.4 NC_001405.1 + 12670 0.66 0.634573
Target:  5'- gGCGCAGcGUgagcgcgcgcaGCAGCAGGgCAaccugGGCu -3'
miRNA:   3'- -UGCGUC-CA-----------CGUCGUCCgGUauaa-UCG- -5'
2230 3' -53.4 NC_001405.1 + 21003 0.66 0.622864
Target:  5'- -aGUAGGUGUAGUaaGGGUCGU---AGCc -3'
miRNA:   3'- ugCGUCCACGUCG--UCCGGUAuaaUCG- -5'
2230 3' -53.4 NC_001405.1 + 16474 0.67 0.599484
Target:  5'- -gGCGGGUGCGcacgggcacgcGCAGGCCGcuaaccgAGUc -3'
miRNA:   3'- ugCGUCCACGU-----------CGUCCGGUauaa---UCG- -5'
2230 3' -53.4 NC_001405.1 + 9478 0.67 0.598318
Target:  5'- gGCGCAuggucucGGUGaCGGCGcGGCCGUucucgcgggGGCg -3'
miRNA:   3'- -UGCGU-------CCAC-GUCGU-CCGGUAuaa------UCG- -5'
2230 3' -53.4 NC_001405.1 + 24231 0.67 0.580867
Target:  5'- aGCGgGGGUGCcucgacggggaagguGGUAGGCgc-GUUGGCg -3'
miRNA:   3'- -UGCgUCCACG---------------UCGUCCGguaUAAUCG- -5'
2230 3' -53.4 NC_001405.1 + 18504 0.67 0.576231
Target:  5'- -gGguGGUG-GGCAGGCCuugcuUUAGUg -3'
miRNA:   3'- ugCguCCACgUCGUCCGGuau--AAUCG- -5'
2230 3' -53.4 NC_001405.1 + 8919 0.67 0.561223
Target:  5'- cACGguGGcgGCGaggucguuggagauGCGGGCCAUG--AGCu -3'
miRNA:   3'- -UGCguCCa-CGU--------------CGUCCGGUAUaaUCG- -5'
2230 3' -53.4 NC_001405.1 + 22724 0.67 0.553185
Target:  5'- aGCGcCGGGUGguGCAcgcuGGCCAgcac-GCu -3'
miRNA:   3'- -UGC-GUCCACguCGU----CCGGUauaauCG- -5'
2230 3' -53.4 NC_001405.1 + 22716 0.67 0.553185
Target:  5'- cGCGCAGG-GCGG-AGGCCccaacuGCg -3'
miRNA:   3'- -UGCGUCCaCGUCgUCCGGuauaauCG- -5'
2230 3' -53.4 NC_001405.1 + 23688 0.68 0.531553
Target:  5'- aGCGCAcGGUGCGGCGGcugaaugaagacgacCCAg--UGGCg -3'
miRNA:   3'- -UGCGU-CCACGUCGUCc--------------GGUauaAUCG- -5'
2230 3' -53.4 NC_001405.1 + 15824 0.68 0.530423
Target:  5'- -gGCAGGUGCGGCGucuGGCgucaGUAaUGGUc -3'
miRNA:   3'- ugCGUCCACGUCGU---CCGg---UAUaAUCG- -5'
2230 3' -53.4 NC_001405.1 + 26780 0.68 0.530423
Target:  5'- cCGCcGGUGCAGUagGGGCUGUAgagaugacggUAGUa -3'
miRNA:   3'- uGCGuCCACGUCG--UCCGGUAUa---------AUCG- -5'
2230 3' -53.4 NC_001405.1 + 27459 0.68 0.508011
Target:  5'- cAC-CAGG-GCAGCGGGCCAa------ -3'
miRNA:   3'- -UGcGUCCaCGUCGUCCGGUauaaucg -5'
2230 3' -53.4 NC_001405.1 + 17718 0.68 0.496955
Target:  5'- aACGgAGGcgGCAGgugaGGGCCAUAUcuGCa -3'
miRNA:   3'- -UGCgUCCa-CGUCg---UCCGGUAUAauCG- -5'
2230 3' -53.4 NC_001405.1 + 8520 0.69 0.46447
Target:  5'- cGCGCGGcGgGCGGUGGGCCGcGggGGUg -3'
miRNA:   3'- -UGCGUC-CaCGUCGUCCGGUaUaaUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.