miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22302 3' -58.2 NC_005045.1 + 16889 0.66 0.447653
Target:  5'- --cCCGCUGGacgACCUGCA-CCUgcugguGGCCc -3'
miRNA:   3'- auaGGCGACU---UGGACGUaGGG------CCGGa -5'
22302 3' -58.2 NC_005045.1 + 29502 0.66 0.437756
Target:  5'- gUcgCCGguggcCUGAGCCUGCAcagCCUuGGCCa -3'
miRNA:   3'- -AuaGGC-----GACUUGGACGUa--GGG-CCGGa -5'
22302 3' -58.2 NC_005045.1 + 38831 0.67 0.408839
Target:  5'- --cCUGCUGGcguACCUGCGcCCCgaGGCCc -3'
miRNA:   3'- auaGGCGACU---UGGACGUaGGG--CCGGa -5'
22302 3' -58.2 NC_005045.1 + 32521 0.67 0.390235
Target:  5'- --gUCGCggGAugGCCgGUAUCUCGGCCUg -3'
miRNA:   3'- auaGGCGa-CU--UGGaCGUAGGGCCGGA- -5'
22302 3' -58.2 NC_005045.1 + 30047 0.67 0.375756
Target:  5'- --gCCGUUGGccGCCUGCAUCUUgucccacugcuccagGGCCUc -3'
miRNA:   3'- auaGGCGACU--UGGACGUAGGG---------------CCGGA- -5'
22302 3' -58.2 NC_005045.1 + 11207 0.67 0.363388
Target:  5'- cAUCagguGCUGGAgCaUGcCGUCCCGGCCc -3'
miRNA:   3'- aUAGg---CGACUUgG-AC-GUAGGGCCGGa -5'
22302 3' -58.2 NC_005045.1 + 33662 0.68 0.343689
Target:  5'- cGUCCGCguagacccGAACCUGCcgCCgaccaucaaggcccUGGCCg -3'
miRNA:   3'- aUAGGCGa-------CUUGGACGuaGG--------------GCCGGa -5'
22302 3' -58.2 NC_005045.1 + 31962 0.68 0.31364
Target:  5'- aGUCgGCUGGauACCUGCcgCCUGgagcGCCUg -3'
miRNA:   3'- aUAGgCGACU--UGGACGuaGGGC----CGGA- -5'
22302 3' -58.2 NC_005045.1 + 31461 0.68 0.31364
Target:  5'- cAUuuGCUGuuCC-GCAcCCCGGCCUc -3'
miRNA:   3'- aUAggCGACuuGGaCGUaGGGCCGGA- -5'
22302 3' -58.2 NC_005045.1 + 33145 0.69 0.267142
Target:  5'- gGUCCGaugcugacacggccCUGAGCC-GCGUCCUGGCg- -3'
miRNA:   3'- aUAGGC--------------GACUUGGaCGUAGGGCCGga -5'
22302 3' -58.2 NC_005045.1 + 41796 0.72 0.185352
Target:  5'- cGUCCGCUGGAagaagcggcCCUGgGUUCUGGCUa -3'
miRNA:   3'- aUAGGCGACUU---------GGACgUAGGGCCGGa -5'
22302 3' -58.2 NC_005045.1 + 13262 0.73 0.161477
Target:  5'- cAUCuCGCUGAaggcGCCUGCcggcaucugGUCCuCGGCCUu -3'
miRNA:   3'- aUAG-GCGACU----UGGACG---------UAGG-GCCGGA- -5'
22302 3' -58.2 NC_005045.1 + 19489 0.75 0.105654
Target:  5'- gGUCUGCUGGAgCUGCG-CgCGGCCUa -3'
miRNA:   3'- aUAGGCGACUUgGACGUaGgGCCGGA- -5'
22302 3' -58.2 NC_005045.1 + 6593 1.06 0.000471
Target:  5'- gUAUCCGCUGAACCUGCAUCCCGGCCUg -3'
miRNA:   3'- -AUAGGCGACUUGGACGUAGGGCCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.