miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22303 3' -59.6 NC_005045.1 + 34882 0.66 0.39091
Target:  5'- gGACGUGGacugGACGCCAGuaUUGgCGCg -3'
miRNA:   3'- -UUGCACUa---CUGCGGUCccGACgGCGa -5'
22303 3' -59.6 NC_005045.1 + 2716 0.66 0.381877
Target:  5'- ---uUGAUcGugGCCAGGGCaGCgGCc -3'
miRNA:   3'- uugcACUA-CugCGGUCCCGaCGgCGa -5'
22303 3' -59.6 NC_005045.1 + 24041 0.66 0.347164
Target:  5'- cAGCG-GAcaGAgcUGCCAGGGCaggUGCCGCa -3'
miRNA:   3'- -UUGCaCUa-CU--GCGGUCCCG---ACGGCGa -5'
22303 3' -59.6 NC_005045.1 + 41289 0.67 0.314766
Target:  5'- ----aGcgGGCGCCGGGGCgGuuGCa -3'
miRNA:   3'- uugcaCuaCUGCGGUCCCGaCggCGa -5'
22303 3' -59.6 NC_005045.1 + 39483 0.68 0.292003
Target:  5'- uGCcUGAgcaaGugGCCuGGGCUGCCGaCg -3'
miRNA:   3'- uUGcACUa---CugCGGuCCCGACGGC-Ga -5'
22303 3' -59.6 NC_005045.1 + 16856 0.68 0.263683
Target:  5'- cGACGaGGUGAucuacauggacUGCCAGGGCgccCCGCUg -3'
miRNA:   3'- -UUGCaCUACU-----------GCGGUCCCGac-GGCGA- -5'
22303 3' -59.6 NC_005045.1 + 36239 0.68 0.256961
Target:  5'- aAGCGguUGAUGgucACGCCAGGGCcgGCCa-- -3'
miRNA:   3'- -UUGC--ACUAC---UGCGGUCCCGa-CGGcga -5'
22303 3' -59.6 NC_005045.1 + 27306 0.69 0.248432
Target:  5'- uGCGUGGUGAUGCUgauaaccgccguccGGGGaguuacaaUGCCGCc -3'
miRNA:   3'- uUGCACUACUGCGG--------------UCCCg-------ACGGCGa -5'
22303 3' -59.6 NC_005045.1 + 10120 0.69 0.237634
Target:  5'- uGGCGUGGUGuccCGCagcGGGC-GCCGCUu -3'
miRNA:   3'- -UUGCACUACu--GCGgu-CCCGaCGGCGA- -5'
22303 3' -59.6 NC_005045.1 + 40591 0.69 0.231468
Target:  5'- cGGCGaGGgcaGcCGCCAGGGCUgcGCCGCg -3'
miRNA:   3'- -UUGCaCUa--CuGCGGUCCCGA--CGGCGa -5'
22303 3' -59.6 NC_005045.1 + 7623 1.05 0.000392
Target:  5'- cAACGUGAUGACGCCAGGGCUGCCGCUg -3'
miRNA:   3'- -UUGCACUACUGCGGUCCCGACGGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.