miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22304 3' -53.5 NC_005045.1 + 11521 0.66 0.763528
Target:  5'- cCUGGccUUCCUGCgacgCGguGGCCGGGu -3'
miRNA:   3'- -GGCC--AGGGACGaauaGCuuCCGGUUC- -5'
22304 3' -53.5 NC_005045.1 + 25538 0.66 0.763528
Target:  5'- aCCGGUgacgaCCgcaucgguaaGCcgGUCGAGGGCCGAu -3'
miRNA:   3'- -GGCCAg----GGa---------CGaaUAGCUUCCGGUUc -5'
22304 3' -53.5 NC_005045.1 + 6079 0.66 0.763528
Target:  5'- gCCGGgucaagCCCUGCUU----GAGGCUGAa -3'
miRNA:   3'- -GGCCa-----GGGACGAAuagcUUCCGGUUc -5'
22304 3' -53.5 NC_005045.1 + 38766 0.66 0.752975
Target:  5'- uCCGGUUCCgGUgac---AAGGCCGAGg -3'
miRNA:   3'- -GGCCAGGGaCGaauagcUUCCGGUUC- -5'
22304 3' -53.5 NC_005045.1 + 28587 0.66 0.720585
Target:  5'- gCGGUggCCCUGgaUAUCGAgcgggAGGUCGGc -3'
miRNA:   3'- gGCCA--GGGACgaAUAGCU-----UCCGGUUc -5'
22304 3' -53.5 NC_005045.1 + 11107 0.67 0.676158
Target:  5'- -aGGUCCCcauccUGCaccUGUCGcaguGGGGCCGGGa -3'
miRNA:   3'- ggCCAGGG-----ACGa--AUAGC----UUCCGGUUC- -5'
22304 3' -53.5 NC_005045.1 + 19003 0.67 0.676158
Target:  5'- cCCGaGUUCCcGCUcggUGaCGAguGGGCCAAGg -3'
miRNA:   3'- -GGC-CAGGGaCGA---AUaGCU--UCCGGUUC- -5'
22304 3' -53.5 NC_005045.1 + 3192 0.68 0.631023
Target:  5'- -aGGUUCCUGCaaUGUCGAAgaugggacGGCCAu- -3'
miRNA:   3'- ggCCAGGGACGa-AUAGCUU--------CCGGUuc -5'
22304 3' -53.5 NC_005045.1 + 14480 0.68 0.597141
Target:  5'- cCCGcUCCaguucauCUUGUCGAAGGCCAGc -3'
miRNA:   3'- -GGCcAGGgac----GAAUAGCUUCCGGUUc -5'
22304 3' -53.5 NC_005045.1 + 2733 0.68 0.597141
Target:  5'- cCUGGagcaCCUGCUUuUUGAucguGGCCAGGg -3'
miRNA:   3'- -GGCCag--GGACGAAuAGCUu---CCGGUUC- -5'
22304 3' -53.5 NC_005045.1 + 35066 0.7 0.508807
Target:  5'- cCCGGUCaCCUGUcgGUCaaauccuGGGCCAGu -3'
miRNA:   3'- -GGCCAG-GGACGaaUAGcu-----UCCGGUUc -5'
22304 3' -53.5 NC_005045.1 + 8002 1.1 0.000956
Target:  5'- uCCGGUCCCUGCUUAUCGAAGGCCAAGu -3'
miRNA:   3'- -GGCCAGGGACGAAUAGCUUCCGGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.