Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22304 | 5' | -59.7 | NC_005045.1 | + | 21070 | 0.66 | 0.440141 |
Target: 5'- gGCCGG-CGGcGccugcaUCGugUUCGAGGACg -3' miRNA: 3'- gCGGCCuGCC-Ca-----AGCugGGGUUCCUG- -5' |
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22304 | 5' | -59.7 | NC_005045.1 | + | 41596 | 0.66 | 0.440141 |
Target: 5'- gGuCCGGugGGGUagcgccgcccUCG-CCgCCcAGGGCa -3' miRNA: 3'- gC-GGCCugCCCA----------AGCuGG-GGuUCCUG- -5' |
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22304 | 5' | -59.7 | NC_005045.1 | + | 31629 | 0.67 | 0.359476 |
Target: 5'- uGCCuaccGugGGGUUCGACgCCCu--GACg -3' miRNA: 3'- gCGGc---CugCCCAAGCUG-GGGuucCUG- -5' |
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22304 | 5' | -59.7 | NC_005045.1 | + | 19523 | 0.67 | 0.359476 |
Target: 5'- gCGCaGaGCGGGgacUCGGCCUCGGGGAa -3' miRNA: 3'- -GCGgCcUGCCCa--AGCUGGGGUUCCUg -5' |
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22304 | 5' | -59.7 | NC_005045.1 | + | 28899 | 0.7 | 0.245638 |
Target: 5'- aGCCGGgccagagugcucggcGCGGaGUgcgCGACUCCGAGGuCa -3' miRNA: 3'- gCGGCC---------------UGCC-CAa--GCUGGGGUUCCuG- -5' |
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22304 | 5' | -59.7 | NC_005045.1 | + | 6905 | 0.71 | 0.213833 |
Target: 5'- gGCCGGACaGG-UCGAaggcaCCGAGGGCc -3' miRNA: 3'- gCGGCCUGcCCaAGCUgg---GGUUCCUG- -5' |
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22304 | 5' | -59.7 | NC_005045.1 | + | 39171 | 0.73 | 0.159897 |
Target: 5'- gGCCGGGCcGGUUccCGACCCU--GGACg -3' miRNA: 3'- gCGGCCUGcCCAA--GCUGGGGuuCCUG- -5' |
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22304 | 5' | -59.7 | NC_005045.1 | + | 8037 | 1.09 | 0.000327 |
Target: 5'- aCGCCGGACGGGUUCGACCCCAAGGACc -3' miRNA: 3'- -GCGGCCUGCCCAAGCUGGGGUUCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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