miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22305 3' -54.1 NC_005045.1 + 33954 0.65 0.735413
Target:  5'- cGGUccagGCCAGggaugccaCGGAACAcugccucgcugaugGCUcGGCGGg -3'
miRNA:   3'- aCCAa---UGGUCg-------GCCUUGU--------------UGA-CCGCC- -5'
22305 3' -54.1 NC_005045.1 + 15099 0.66 0.727837
Target:  5'- gGGaUUACCgggacAGCCGGGACuucGACggcaGCGGg -3'
miRNA:   3'- aCC-AAUGG-----UCGGCCUUG---UUGac--CGCC- -5'
22305 3' -54.1 NC_005045.1 + 8565 0.66 0.727837
Target:  5'- gGGggACCAcggaaucaaguuGCCGGGGCugguGCUGcCGGc -3'
miRNA:   3'- aCCaaUGGU------------CGGCCUUGu---UGACcGCC- -5'
22305 3' -54.1 NC_005045.1 + 29569 0.66 0.71693
Target:  5'- cUGGcgGCCAGCCuGGACAugaACcaGCGGg -3'
miRNA:   3'- -ACCaaUGGUCGGcCUUGU---UGacCGCC- -5'
22305 3' -54.1 NC_005045.1 + 13850 0.66 0.71693
Target:  5'- cUGGUgGCCAGCauuGAAaccauACUGGCGa -3'
miRNA:   3'- -ACCAaUGGUCGgc-CUUgu---UGACCGCc -5'
22305 3' -54.1 NC_005045.1 + 16882 0.66 0.705935
Target:  5'- aGGgcGCCccGCUGGAcgaccuGCAccuGCUGGUGGc -3'
miRNA:   3'- aCCaaUGGu-CGGCCU------UGU---UGACCGCC- -5'
22305 3' -54.1 NC_005045.1 + 26042 0.66 0.68373
Target:  5'- cGGccaggGCUGGUCGGuauGCAGCaGGUGGg -3'
miRNA:   3'- aCCaa---UGGUCGGCCu--UGUUGaCCGCC- -5'
22305 3' -54.1 NC_005045.1 + 12251 0.67 0.661318
Target:  5'- uUGGUcGCCAGCuCGGuga---UGGUGGg -3'
miRNA:   3'- -ACCAaUGGUCG-GCCuuguugACCGCC- -5'
22305 3' -54.1 NC_005045.1 + 28175 0.67 0.661318
Target:  5'- uUGaGUUGCCGGCUG-AACAACcgaaggGGCGu -3'
miRNA:   3'- -AC-CAAUGGUCGGCcUUGUUGa-----CCGCc -5'
22305 3' -54.1 NC_005045.1 + 28111 0.67 0.656819
Target:  5'- cGGUUguucaGCCGGCaacucaaugccggGGAGCcuCUGGUGGa -3'
miRNA:   3'- aCCAA-----UGGUCGg------------CCUUGuuGACCGCC- -5'
22305 3' -54.1 NC_005045.1 + 28718 0.67 0.650063
Target:  5'- gGGUcagaagagUACCAcGgCGGGGCAacgguccccGCUGGUGGc -3'
miRNA:   3'- aCCA--------AUGGU-CgGCCUUGU---------UGACCGCC- -5'
22305 3' -54.1 NC_005045.1 + 27580 0.68 0.616239
Target:  5'- -cGUUGCCcuGCCaGAGguACUGGUGGc -3'
miRNA:   3'- acCAAUGGu-CGGcCUUguUGACCGCC- -5'
22305 3' -54.1 NC_005045.1 + 32118 0.68 0.60498
Target:  5'- cGGUcgUGCUGGCaUGGcuGCuGCUGGCGGc -3'
miRNA:   3'- aCCA--AUGGUCG-GCCu-UGuUGACCGCC- -5'
22305 3' -54.1 NC_005045.1 + 15357 0.68 0.593745
Target:  5'- gGGgaagGCCAagccuccccuGCUGGAACcGCUgcGGCGGg -3'
miRNA:   3'- aCCaa--UGGU----------CGGCCUUGuUGA--CCGCC- -5'
22305 3' -54.1 NC_005045.1 + 40672 0.69 0.549237
Target:  5'- cGGUagu--GCCGGAGCAGaUGGUGGg -3'
miRNA:   3'- aCCAaugguCGGCCUUGUUgACCGCC- -5'
22305 3' -54.1 NC_005045.1 + 16013 0.69 0.549237
Target:  5'- gUGGUaggcguCCAGCUcGAugAuccACUGGCGGa -3'
miRNA:   3'- -ACCAau----GGUCGGcCUugU---UGACCGCC- -5'
22305 3' -54.1 NC_005045.1 + 6777 0.69 0.52736
Target:  5'- ----cACCuccGCCGGAAUGGCUGGCa- -3'
miRNA:   3'- accaaUGGu--CGGCCUUGUUGACCGcc -5'
22305 3' -54.1 NC_005045.1 + 5080 0.7 0.48466
Target:  5'- gGGUUG-CAGCCuGGGcugccgACGACUGGaCGGc -3'
miRNA:   3'- aCCAAUgGUCGG-CCU------UGUUGACC-GCC- -5'
22305 3' -54.1 NC_005045.1 + 10940 0.7 0.473205
Target:  5'- gGGUUACUGGCCaggucgcGGAAgCGACugaagcugggaUGGCGGa -3'
miRNA:   3'- aCCAAUGGUCGG-------CCUU-GUUG-----------ACCGCC- -5'
22305 3' -54.1 NC_005045.1 + 31027 0.7 0.453748
Target:  5'- gGGUaacagUGCCGGCaugcugaagcaGGAcguguuCAACUGGCGGa -3'
miRNA:   3'- aCCA-----AUGGUCGg----------CCUu-----GUUGACCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.