miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22305 5' -51.6 NC_005045.1 + 24558 0.66 0.839899
Target:  5'- aUCAaggcuGCCGcgaUGGACGcuCCGGUAGAc -3'
miRNA:   3'- cAGU-----UGGUug-ACCUGUucGGCCAUCU- -5'
22305 5' -51.6 NC_005045.1 + 23334 0.66 0.830544
Target:  5'- -cCGACCAGCgccauGACGccgcacuaccAGCCGGUGGc -3'
miRNA:   3'- caGUUGGUUGac---CUGU----------UCGGCCAUCu -5'
22305 5' -51.6 NC_005045.1 + 41262 0.66 0.811149
Target:  5'- uGUCAACgacagCAGCaGGcACAGGCCGGUc-- -3'
miRNA:   3'- -CAGUUG-----GUUGaCC-UGUUCGGCCAucu -5'
22305 5' -51.6 NC_005045.1 + 6792 0.66 0.800121
Target:  5'- cUCAGcuccCCGGCUGGACucaggcuuucccgGAGCgGGUGGu -3'
miRNA:   3'- cAGUU----GGUUGACCUG-------------UUCGgCCAUCu -5'
22305 5' -51.6 NC_005045.1 + 17750 0.67 0.790923
Target:  5'- ---cGCCugUUGGACGGGCCGcUGGAc -3'
miRNA:   3'- caguUGGuuGACCUGUUCGGCcAUCU- -5'
22305 5' -51.6 NC_005045.1 + 6010 0.68 0.737377
Target:  5'- uUCAGCCucaAGCaGGGCuugacccGGCUGGUGGAg -3'
miRNA:   3'- cAGUUGG---UUGaCCUGu------UCGGCCAUCU- -5'
22305 5' -51.6 NC_005045.1 + 9462 0.68 0.679748
Target:  5'- -aCGGcCCAACgaGGGCGucgcccuGGCCGGUGGGu -3'
miRNA:   3'- caGUU-GGUUGa-CCUGU-------UCGGCCAUCU- -5'
22305 5' -51.6 NC_005045.1 + 26819 0.69 0.669393
Target:  5'- --gGGCC--UUGGugGAGCCGGUGGc -3'
miRNA:   3'- cagUUGGuuGACCugUUCGGCCAUCu -5'
22305 5' -51.6 NC_005045.1 + 8797 0.7 0.611541
Target:  5'- uUCAGCC-ACaGGAUggGCCGGccUGGGu -3'
miRNA:   3'- cAGUUGGuUGaCCUGuuCGGCC--AUCU- -5'
22305 5' -51.6 NC_005045.1 + 8383 0.72 0.498481
Target:  5'- cUCAACgAACUGGAuuuuuCAGGCagGGUGGAu -3'
miRNA:   3'- cAGUUGgUUGACCU-----GUUCGg-CCAUCU- -5'
22305 5' -51.6 NC_005045.1 + 8325 1.09 0.001631
Target:  5'- uGUCAACCAACUGGACAAGCCGGUAGAc -3'
miRNA:   3'- -CAGUUGGUUGACCUGUUCGGCCAUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.