miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22306 5' -59.8 NC_005045.1 + 6188 0.66 0.384779
Target:  5'- aGGCCgaGGCucGUGAGCgggcgaagGCGgCGGCUa -3'
miRNA:   3'- -CUGGa-CCGcaUACUCGa-------CGCgGCCGA- -5'
22306 5' -59.8 NC_005045.1 + 40595 0.67 0.342545
Target:  5'- aGGCC-GGCGagggcagccgccaGGGCUGCGCCGcGCa -3'
miRNA:   3'- -CUGGaCCGCaua----------CUCGACGCGGC-CGa -5'
22306 5' -59.8 NC_005045.1 + 10266 0.67 0.332725
Target:  5'- cGACCgGGCGUAUGGcccgcaagaccccGCUGaccaagGCCGaGCUg -3'
miRNA:   3'- -CUGGaCCGCAUACU-------------CGACg-----CGGC-CGA- -5'
22306 5' -59.8 NC_005045.1 + 7959 0.67 0.325497
Target:  5'- cGACCcggcaGGUGUccgugguaGUGAGgcgugaUGCGCCGGCUc -3'
miRNA:   3'- -CUGGa----CCGCA--------UACUCg-----ACGCGGCCGA- -5'
22306 5' -59.8 NC_005045.1 + 20908 0.67 0.305274
Target:  5'- aGGCC-GGCGccccauccgaacugAUGGGcCUGUGCUGGCUg -3'
miRNA:   3'- -CUGGaCCGCa-------------UACUC-GACGCGGCCGA- -5'
22306 5' -59.8 NC_005045.1 + 611 0.67 0.30225
Target:  5'- -cCCUGGCGcUGUGcuuguGCUGCcGCUGGUc -3'
miRNA:   3'- cuGGACCGC-AUACu----CGACG-CGGCCGa -5'
22306 5' -59.8 NC_005045.1 + 32122 0.67 0.30225
Target:  5'- cGugCUGGC--AUG-GCUGCuGCUGGCg -3'
miRNA:   3'- -CugGACCGcaUACuCGACG-CGGCCGa -5'
22306 5' -59.8 NC_005045.1 + 2931 0.7 0.205071
Target:  5'- -uCCUGGCGgguucGUGguAGUggGCGCCGGCg -3'
miRNA:   3'- cuGGACCGCa----UAC--UCGa-CGCGGCCGa -5'
22306 5' -59.8 NC_005045.1 + 18899 0.71 0.174449
Target:  5'- -uCCUGGCccagGUGgcgGAGCUGCGCCuGCc -3'
miRNA:   3'- cuGGACCG----CAUa--CUCGACGCGGcCGa -5'
22306 5' -59.8 NC_005045.1 + 8451 1.08 0.000261
Target:  5'- cGACCUGGCGUAUGAGCUGCGCCGGCUg -3'
miRNA:   3'- -CUGGACCGCAUACUCGACGCGGCCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.