miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22307 3' -60.4 NC_005045.1 + 9811 0.66 0.349361
Target:  5'- aACUggccCGACCCcgaAGG-CGGCCCGcgCCUg -3'
miRNA:   3'- aUGAa---GCUGGG---UCCgGCCGGGUa-GGA- -5'
22307 3' -60.4 NC_005045.1 + 30179 0.66 0.349361
Target:  5'- gGCUUCGGCCCAGGagaucaaCCCcUCCg -3'
miRNA:   3'- aUGAAGCUGGGUCCggcc---GGGuAGGa -5'
22307 3' -60.4 NC_005045.1 + 29474 0.66 0.341103
Target:  5'- aGC-UCaGCCUggaagAGGCCGGCCUGUUCUa -3'
miRNA:   3'- aUGaAGcUGGG-----UCCGGCCGGGUAGGA- -5'
22307 3' -60.4 NC_005045.1 + 18679 0.66 0.332987
Target:  5'- gGCaaUGACCUGGGgCGGCCCuggCCg -3'
miRNA:   3'- aUGaaGCUGGGUCCgGCCGGGua-GGa -5'
22307 3' -60.4 NC_005045.1 + 29927 0.67 0.325013
Target:  5'- gGCaUUG-CCCAGGCCGGUCauggCCUu -3'
miRNA:   3'- aUGaAGCuGGGUCCGGCCGGgua-GGA- -5'
22307 3' -60.4 NC_005045.1 + 20156 0.67 0.325013
Target:  5'- aGCcUCGGCCCGcaGCCGGaCCCGcacuUCCUc -3'
miRNA:   3'- aUGaAGCUGGGUc-CGGCC-GGGU----AGGA- -5'
22307 3' -60.4 NC_005045.1 + 11928 0.67 0.309495
Target:  5'- gACUUCGAgguccaccUUCAGGCCGGCaCAcUCCa -3'
miRNA:   3'- aUGAAGCU--------GGGUCCGGCCGgGU-AGGa -5'
22307 3' -60.4 NC_005045.1 + 23737 0.67 0.287287
Target:  5'- gUGCUga-GCCUGGGCCGGaCCCAggacuUCCUu -3'
miRNA:   3'- -AUGAagcUGGGUCCGGCC-GGGU-----AGGA- -5'
22307 3' -60.4 NC_005045.1 + 19434 0.68 0.280168
Target:  5'- ---aUCGACCCAGGCUG-CCCggUCg -3'
miRNA:   3'- augaAGCUGGGUCCGGCcGGGuaGGa -5'
22307 3' -60.4 NC_005045.1 + 5826 0.68 0.24667
Target:  5'- cGCUgguaUCGAagaAGGCCGGCCCgcuGUCCg -3'
miRNA:   3'- aUGA----AGCUgggUCCGGCCGGG---UAGGa -5'
22307 3' -60.4 NC_005045.1 + 41264 0.69 0.222319
Target:  5'- cACUgaUUGACCCuaccacccAGGCUGGCCUgAUCCg -3'
miRNA:   3'- aUGA--AGCUGGG--------UCCGGCCGGG-UAGGa -5'
22307 3' -60.4 NC_005045.1 + 6123 0.72 0.144546
Target:  5'- cGCgUCGuCCCaauacAGGCCGGCCCGUugaCCUa -3'
miRNA:   3'- aUGaAGCuGGG-----UCCGGCCGGGUA---GGA- -5'
22307 3' -60.4 NC_005045.1 + 28769 0.73 0.115756
Target:  5'- -uCUUCuGACCCagcAGGCCGGCCUuagCCUg -3'
miRNA:   3'- auGAAG-CUGGG---UCCGGCCGGGua-GGA- -5'
22307 3' -60.4 NC_005045.1 + 8721 1.06 0.000328
Target:  5'- gUACUUCGACCCAGGCCGGCCCAUCCUg -3'
miRNA:   3'- -AUGAAGCUGGGUCCGGCCGGGUAGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.