miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22308 3' -62.2 NC_005045.1 + 25496 0.66 0.344865
Target:  5'- uGCGGCCCGugGGGucaGGUGUCaGCUUg-- -3'
miRNA:   3'- -UGCCGGGUugCUC---CCGCAG-CGGGacc -5'
22308 3' -62.2 NC_005045.1 + 18692 0.66 0.344865
Target:  5'- gGCGGCCCuggccggagcguGAUGcuGGCGccgccgCGaCCCUGGa -3'
miRNA:   3'- -UGCCGGG------------UUGCucCCGCa-----GC-GGGACC- -5'
22308 3' -62.2 NC_005045.1 + 40595 0.66 0.329118
Target:  5'- -aGG-CCGGCGAGGGCaGcCGCCa-GGg -3'
miRNA:   3'- ugCCgGGUUGCUCCCG-CaGCGGgaCC- -5'
22308 3' -62.2 NC_005045.1 + 39641 0.66 0.329118
Target:  5'- gACGGCggCGACGAGcuGuCGUaUGCCCUGGg -3'
miRNA:   3'- -UGCCGg-GUUGCUCc-C-GCA-GCGGGACC- -5'
22308 3' -62.2 NC_005045.1 + 35944 0.66 0.321446
Target:  5'- gACGcCgCCAAUGAGGcgcuGCGccgUGCCCUGGg -3'
miRNA:   3'- -UGCcG-GGUUGCUCC----CGCa--GCGGGACC- -5'
22308 3' -62.2 NC_005045.1 + 31309 0.67 0.299238
Target:  5'- uAUGGCCUuccagaugGGCGaAGGGCGU-GCCC-GGc -3'
miRNA:   3'- -UGCCGGG--------UUGC-UCCCGCAgCGGGaCC- -5'
22308 3' -62.2 NC_005045.1 + 28590 0.67 0.292103
Target:  5'- gUGGCCCuggauaucgAGCGGGaggucGGCGagGCCCUGa -3'
miRNA:   3'- uGCCGGG---------UUGCUC-----CCGCagCGGGACc -5'
22308 3' -62.2 NC_005045.1 + 28806 0.67 0.2715
Target:  5'- cCGGCcaCCAGCGGGGacCGUUGCCCcgccgUGGu -3'
miRNA:   3'- uGCCG--GGUUGCUCCc-GCAGCGGG-----ACC- -5'
22308 3' -62.2 NC_005045.1 + 30846 0.67 0.269505
Target:  5'- aGCGGCagccuCCucgccgucgaguacGACGAGaacGGUGUgGCCCUGGa -3'
miRNA:   3'- -UGCCG-----GG--------------UUGCUC---CCGCAgCGGGACC- -5'
22308 3' -62.2 NC_005045.1 + 2825 0.67 0.264896
Target:  5'- gAUGaGUCCAGCGAuGGGUG-CaGCCUUGGc -3'
miRNA:   3'- -UGC-CGGGUUGCU-CCCGCaG-CGGGACC- -5'
22308 3' -62.2 NC_005045.1 + 16700 0.67 0.264896
Target:  5'- uGCGGCCCAGCcAGugcaGCG-CGCCCUu- -3'
miRNA:   3'- -UGCCGGGUUGcUCc---CGCaGCGGGAcc -5'
22308 3' -62.2 NC_005045.1 + 19475 0.68 0.25208
Target:  5'- -gGGCCUucGGCGAGGGCG-CGCU--GGa -3'
miRNA:   3'- ugCCGGG--UUGCUCCCGCaGCGGgaCC- -5'
22308 3' -62.2 NC_005045.1 + 41205 0.69 0.216131
Target:  5'- cACGGUCCAccuccugGCGcuGGGUGUUGgUCCUGGc -3'
miRNA:   3'- -UGCCGGGU-------UGCu-CCCGCAGC-GGGACC- -5'
22308 3' -62.2 NC_005045.1 + 37997 0.69 0.211215
Target:  5'- gGCGGCCa---GAGGGCa--GCgCCUGGg -3'
miRNA:   3'- -UGCCGGguugCUCCCGcagCG-GGACC- -5'
22308 3' -62.2 NC_005045.1 + 30238 0.69 0.195519
Target:  5'- -aGGCCgAGC-AGGGCGcCGUggCCUGGg -3'
miRNA:   3'- ugCCGGgUUGcUCCCGCaGCG--GGACC- -5'
22308 3' -62.2 NC_005045.1 + 40534 0.69 0.190517
Target:  5'- gGCGGCugCCcuCGccGGCcuuGUCGCCCUGGa -3'
miRNA:   3'- -UGCCG--GGuuGCucCCG---CAGCGGGACC- -5'
22308 3' -62.2 NC_005045.1 + 29907 0.7 0.185629
Target:  5'- gGCGGCCCuggaAGCGGGGGacaucaaCGCCCUa- -3'
miRNA:   3'- -UGCCGGG----UUGCUCCCgca----GCGGGAcc -5'
22308 3' -62.2 NC_005045.1 + 33527 0.7 0.176183
Target:  5'- gAUGGCUgAGC-AGGGCGUUGgCCUGa -3'
miRNA:   3'- -UGCCGGgUUGcUCCCGCAGCgGGACc -5'
22308 3' -62.2 NC_005045.1 + 9813 0.7 0.171622
Target:  5'- cUGGCCCGAcccCGAaGGCGgccCGCgCCUGGg -3'
miRNA:   3'- uGCCGGGUU---GCUcCCGCa--GCG-GGACC- -5'
22308 3' -62.2 NC_005045.1 + 27350 0.7 0.162816
Target:  5'- uGCGGCCagucACGGcaGGUGcCGCCCUGGu -3'
miRNA:   3'- -UGCCGGgu--UGCUc-CCGCaGCGGGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.