Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22308 | 3' | -62.2 | NC_005045.1 | + | 9461 | 1.08 | 0.0002 |
Target: 5'- cACGGCCCAACGAGGGCGUCGCCCUGGc -3' miRNA: 3'- -UGCCGGGUUGCUCCCGCAGCGGGACC- -5' |
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22308 | 3' | -62.2 | NC_005045.1 | + | 24974 | 0.78 | 0.044661 |
Target: 5'- gACGGCCCAGCGGguGGGCugcgaUUGCCUUGGu -3' miRNA: 3'- -UGCCGGGUUGCU--CCCGc----AGCGGGACC- -5' |
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22308 | 3' | -62.2 | NC_005045.1 | + | 8799 | 0.75 | 0.069979 |
Target: 5'- gGCGGCCCuggguAUGAccguGGGUGagauucUCGCCCUGGa -3' miRNA: 3'- -UGCCGGGu----UGCU----CCCGC------AGCGGGACC- -5' |
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22308 | 3' | -62.2 | NC_005045.1 | + | 12506 | 0.75 | 0.073985 |
Target: 5'- -aGaGCCU--UGAGGGCGUCGCCgCUGGu -3' miRNA: 3'- ugC-CGGGuuGCUCCCGCAGCGG-GACC- -5' |
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22308 | 3' | -62.2 | NC_005045.1 | + | 33360 | 0.74 | 0.084985 |
Target: 5'- cUGGCCCAGCccggaGAGGGCGcacggCGCCUccUGGg -3' miRNA: 3'- uGCCGGGUUG-----CUCCCGCa----GCGGG--ACC- -5' |
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22308 | 3' | -62.2 | NC_005045.1 | + | 33444 | 0.72 | 0.131535 |
Target: 5'- gACGGCCCAG-GAGGcGcCGUgCGCCCUcuccGGg -3' miRNA: 3'- -UGCCGGGUUgCUCC-C-GCA-GCGGGA----CC- -5' |
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22308 | 3' | -62.2 | NC_005045.1 | + | 5129 | 0.71 | 0.138792 |
Target: 5'- -gGGCCUAuuACGugcGGGCcuuacUCGCCCUGGg -3' miRNA: 3'- ugCCGGGU--UGCu--CCCGc----AGCGGGACC- -5' |
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22308 | 3' | -62.2 | NC_005045.1 | + | 19816 | 0.71 | 0.138792 |
Target: 5'- uACGGCaCC-ACGuucaAGGGCGUCGUggaccacugCCUGGa -3' miRNA: 3'- -UGCCG-GGuUGC----UCCCGCAGCG---------GGACC- -5' |
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22308 | 3' | -62.2 | NC_005045.1 | + | 16750 | 0.71 | 0.142557 |
Target: 5'- --cGCCUAuCGAGGGCugggugugGUCGCUCUGGa -3' miRNA: 3'- ugcCGGGUuGCUCCCG--------CAGCGGGACC- -5' |
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22308 | 3' | -62.2 | NC_005045.1 | + | 29907 | 0.7 | 0.185629 |
Target: 5'- gGCGGCCCuggaAGCGGGGGacaucaaCGCCCUa- -3' miRNA: 3'- -UGCCGGG----UUGCUCCCgca----GCGGGAcc -5' |
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22308 | 3' | -62.2 | NC_005045.1 | + | 9813 | 0.7 | 0.171622 |
Target: 5'- cUGGCCCGAcccCGAaGGCGgccCGCgCCUGGg -3' miRNA: 3'- uGCCGGGUU---GCUcCCGCa--GCG-GGACC- -5' |
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22308 | 3' | -62.2 | NC_005045.1 | + | 27350 | 0.7 | 0.162816 |
Target: 5'- uGCGGCCagucACGGcaGGUGcCGCCCUGGu -3' miRNA: 3'- -UGCCGGgu--UGCUc-CCGCaGCGGGACC- -5' |
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22308 | 3' | -62.2 | NC_005045.1 | + | 33527 | 0.7 | 0.176183 |
Target: 5'- gAUGGCUgAGC-AGGGCGUUGgCCUGa -3' miRNA: 3'- -UGCCGGgUUGcUCCCGCAGCgGGACc -5' |
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22308 | 3' | -62.2 | NC_005045.1 | + | 41205 | 0.69 | 0.216131 |
Target: 5'- cACGGUCCAccuccugGCGcuGGGUGUUGgUCCUGGc -3' miRNA: 3'- -UGCCGGGU-------UGCu-CCCGCAGC-GGGACC- -5' |
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22308 | 3' | -62.2 | NC_005045.1 | + | 30238 | 0.69 | 0.195519 |
Target: 5'- -aGGCCgAGC-AGGGCGcCGUggCCUGGg -3' miRNA: 3'- ugCCGGgUUGcUCCCGCaGCG--GGACC- -5' |
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22308 | 3' | -62.2 | NC_005045.1 | + | 40534 | 0.69 | 0.190517 |
Target: 5'- gGCGGCugCCcuCGccGGCcuuGUCGCCCUGGa -3' miRNA: 3'- -UGCCG--GGuuGCucCCG---CAGCGGGACC- -5' |
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22308 | 3' | -62.2 | NC_005045.1 | + | 37997 | 0.69 | 0.211215 |
Target: 5'- gGCGGCCa---GAGGGCa--GCgCCUGGg -3' miRNA: 3'- -UGCCGGguugCUCCCGcagCG-GGACC- -5' |
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22308 | 3' | -62.2 | NC_005045.1 | + | 19475 | 0.68 | 0.25208 |
Target: 5'- -gGGCCUucGGCGAGGGCG-CGCU--GGa -3' miRNA: 3'- ugCCGGG--UUGCUCCCGCaGCGGgaCC- -5' |
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22308 | 3' | -62.2 | NC_005045.1 | + | 28590 | 0.67 | 0.292103 |
Target: 5'- gUGGCCCuggauaucgAGCGGGaggucGGCGagGCCCUGa -3' miRNA: 3'- uGCCGGG---------UUGCUC-----CCGCagCGGGACc -5' |
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22308 | 3' | -62.2 | NC_005045.1 | + | 31309 | 0.67 | 0.299238 |
Target: 5'- uAUGGCCUuccagaugGGCGaAGGGCGU-GCCC-GGc -3' miRNA: 3'- -UGCCGGG--------UUGC-UCCCGCAgCGGGaCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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