miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22308 5' -57.6 NC_005045.1 + 3641 0.66 0.478065
Target:  5'- -gCCUUCGuCGAacuaugguuCCUCGgcgGCGUGGuCGCu -3'
miRNA:   3'- aaGGGAGC-GCU---------GGAGUa--CGUACC-GCG- -5'
22308 5' -57.6 NC_005045.1 + 9495 1.08 0.000417
Target:  5'- gUUCCCUCGCGACCUCAUGCAUGGCGCc -3'
miRNA:   3'- -AAGGGAGCGCUGGAGUACGUACCGCG- -5'
22308 5' -57.6 NC_005045.1 + 9519 0.66 0.457673
Target:  5'- -gCCCUCGUugGGCC--GUGCAUcagaguacaGGCGCa -3'
miRNA:   3'- aaGGGAGCG--CUGGagUACGUA---------CCGCG- -5'
22308 5' -57.6 NC_005045.1 + 9687 0.68 0.354729
Target:  5'- gUCCCUCGUaggcugccguGGCCUgGaggGCAUGGaCGUg -3'
miRNA:   3'- aAGGGAGCG----------CUGGAgUa--CGUACC-GCG- -5'
22308 5' -57.6 NC_005045.1 + 37317 0.66 0.467812
Target:  5'- ---aCUCGCGGCagUC-UGuCGUGGCGCg -3'
miRNA:   3'- aaggGAGCGCUGg-AGuAC-GUACCGCG- -5'
22308 5' -57.6 NC_005045.1 + 39539 0.68 0.363388
Target:  5'- -gCCaCUUGCucagGACacuCUCGUGCGUGGCGUc -3'
miRNA:   3'- aaGG-GAGCG----CUG---GAGUACGUACCGCG- -5'
22308 5' -57.6 NC_005045.1 + 39943 0.68 0.381143
Target:  5'- -aCCCU-GCGGCCcaUCAUGCA--GCGCc -3'
miRNA:   3'- aaGGGAgCGCUGG--AGUACGUacCGCG- -5'
22308 5' -57.6 NC_005045.1 + 41176 0.75 0.118464
Target:  5'- gUCCUggcaGCGACCUCcuUGaCGUGGCGCu -3'
miRNA:   3'- aAGGGag--CGCUGGAGu-AC-GUACCGCG- -5'
22308 5' -57.6 NC_005045.1 + 41577 0.66 0.498895
Target:  5'- -gCCCUCGCcGCC-CAggGCAgUGGCuGCu -3'
miRNA:   3'- aaGGGAGCGcUGGaGUa-CGU-ACCG-CG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.