miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22309 3' -57.4 NC_005045.1 + 284 0.66 0.497102
Target:  5'- aGCCAGGGCCaGAGCcaggGAAGaccguagGCUgGCGc -3'
miRNA:   3'- -UGGUUCCGG-CUCGa---CUUCa------CGGaCGU- -5'
22309 3' -57.4 NC_005045.1 + 42347 0.66 0.497102
Target:  5'- aGCCAGGGCCaGAGCcaggGAAGaccguagGCUgGCGc -3'
miRNA:   3'- -UGGUUCCGG-CUCGa---CUUCa------CGGaCGU- -5'
22309 3' -57.4 NC_005045.1 + 6959 0.66 0.497102
Target:  5'- -aCGGGccGCCGAGCUGGcuGGUGCCg--- -3'
miRNA:   3'- ugGUUC--CGGCUCGACU--UCACGGacgu -5'
22309 3' -57.4 NC_005045.1 + 4061 0.66 0.497102
Target:  5'- uGCCucGGCCu-GCUGGcaGGcGCCUGCu -3'
miRNA:   3'- -UGGuuCCGGcuCGACU--UCaCGGACGu -5'
22309 3' -57.4 NC_005045.1 + 41169 0.66 0.486564
Target:  5'- gACCAGaaccGCCcguGGGCUGAccggccuGUGCCUGCu -3'
miRNA:   3'- -UGGUUc---CGG---CUCGACUu------CACGGACGu -5'
22309 3' -57.4 NC_005045.1 + 15852 0.66 0.486564
Target:  5'- gGCgGAGGCCGAGgUGcuGUGgaUGCGc -3'
miRNA:   3'- -UGgUUCCGGCUCgACuuCACggACGU- -5'
22309 3' -57.4 NC_005045.1 + 23837 0.66 0.485516
Target:  5'- cACCAAGGCCGccaucggucGGCUGAuggacucGGgcgaugcccagGCCaUGCAa -3'
miRNA:   3'- -UGGUUCCGGC---------UCGACU-------UCa----------CGG-ACGU- -5'
22309 3' -57.4 NC_005045.1 + 14123 0.66 0.476132
Target:  5'- aGCCuuguuGGCCaGGGC-GAGGgcgGCUUGCAg -3'
miRNA:   3'- -UGGuu---CCGG-CUCGaCUUCa--CGGACGU- -5'
22309 3' -57.4 NC_005045.1 + 40826 0.66 0.465813
Target:  5'- aACCAAGGCCGcGCcacUGAGGgcUGCCaaGCc -3'
miRNA:   3'- -UGGUUCCGGCuCG---ACUUC--ACGGa-CGu -5'
22309 3' -57.4 NC_005045.1 + 13275 0.66 0.44553
Target:  5'- uGCCAuccGGCCccaucucGCUGAAGgcGCCUGCc -3'
miRNA:   3'- -UGGUu--CCGGcu-----CGACUUCa-CGGACGu -5'
22309 3' -57.4 NC_005045.1 + 14966 0.68 0.37868
Target:  5'- cGCUggGaGCCGu-CUGAGGcacUGCCUGCGg -3'
miRNA:   3'- -UGGuuC-CGGCucGACUUC---ACGGACGU- -5'
22309 3' -57.4 NC_005045.1 + 27429 0.68 0.343623
Target:  5'- uGCCGGGGCCG-GCUGAguacauccaggcGGcgGCCUccaGCGg -3'
miRNA:   3'- -UGGUUCCGGCuCGACU------------UCa-CGGA---CGU- -5'
22309 3' -57.4 NC_005045.1 + 14804 0.69 0.318902
Target:  5'- -gCAGGGCCGAGCcgggGAAGUuggugGCCgaGCGg -3'
miRNA:   3'- ugGUUCCGGCUCGa---CUUCA-----CGGa-CGU- -5'
22309 3' -57.4 NC_005045.1 + 30100 0.69 0.310964
Target:  5'- cCCAggcgcAGGCCGAGCUGcguacCCUGCAc -3'
miRNA:   3'- uGGU-----UCCGGCUCGACuucacGGACGU- -5'
22309 3' -57.4 NC_005045.1 + 34476 0.69 0.303177
Target:  5'- -aCGGGGCCGAGCU--GGUGCUcacgcgGCAc -3'
miRNA:   3'- ugGUUCCGGCUCGAcuUCACGGa-----CGU- -5'
22309 3' -57.4 NC_005045.1 + 36223 0.72 0.209045
Target:  5'- cGCCAGGGCCGGccacgauGUUGAGGUcgcgaaugcccGCCUGUu -3'
miRNA:   3'- -UGGUUCCGGCU-------CGACUUCA-----------CGGACGu -5'
22309 3' -57.4 NC_005045.1 + 11929 0.77 0.086981
Target:  5'- aAUCGAGGCCGAGCUGAAGaaGCUgaUGCc -3'
miRNA:   3'- -UGGUUCCGGCUCGACUUCa-CGG--ACGu -5'
22309 3' -57.4 NC_005045.1 + 23471 0.84 0.02558
Target:  5'- uACCGGGGCCG-GCUGAgcgGGUGCUUGCGg -3'
miRNA:   3'- -UGGUUCCGGCuCGACU---UCACGGACGU- -5'
22309 3' -57.4 NC_005045.1 + 10297 1.08 0.000414
Target:  5'- gACCAAGGCCGAGCUGAAGUGCCUGCAc -3'
miRNA:   3'- -UGGUUCCGGCUCGACUUCACGGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.