Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22310 | 5' | -54.7 | NC_005045.1 | + | 10445 | 1.11 | 0.00065 |
Target: 5'- aCCCCGUACUUCUUCCAGGUAGCCGCAc -3' miRNA: 3'- -GGGGCAUGAAGAAGGUCCAUCGGCGU- -5' |
|||||||
22310 | 5' | -54.7 | NC_005045.1 | + | 9608 | 0.68 | 0.572007 |
Target: 5'- aCCCGcGCUUCgUCCGggacGGUGGCUGgAg -3' miRNA: 3'- gGGGCaUGAAGaAGGU----CCAUCGGCgU- -5' |
|||||||
22310 | 5' | -54.7 | NC_005045.1 | + | 27543 | 0.76 | 0.190179 |
Target: 5'- uCCgCCGUGCUgguaccaaacaCCAGGUAGCCGCu -3' miRNA: 3'- -GG-GGCAUGAagaa-------GGUCCAUCGGCGu -5' |
|||||||
22310 | 5' | -54.7 | NC_005045.1 | + | 29642 | 0.76 | 0.198685 |
Target: 5'- gCCCCGcUGgUUCaugUCCAGGcUGGCCGCc -3' miRNA: 3'- -GGGGC-AUgAAGa--AGGUCC-AUCGGCGu -5' |
|||||||
22310 | 5' | -54.7 | NC_005045.1 | + | 24281 | 0.73 | 0.303019 |
Target: 5'- gCCCagGUGC-UCUUCCAGGUGGaugucaacguCCGCGu -3' miRNA: 3'- -GGGg-CAUGaAGAAGGUCCAUC----------GGCGU- -5' |
|||||||
22310 | 5' | -54.7 | NC_005045.1 | + | 17753 | 0.66 | 0.672738 |
Target: 5'- uCCaCCGUcauCUUCUUCCagucgugaggcAGGUAGCCc-- -3' miRNA: 3'- -GG-GGCAu--GAAGAAGG-----------UCCAUCGGcgu -5' |
|||||||
22310 | 5' | -54.7 | NC_005045.1 | + | 29538 | 0.66 | 0.694961 |
Target: 5'- -gCCG-GCcUCUUCCAGGcugAGCUGCc -3' miRNA: 3'- ggGGCaUGaAGAAGGUCCa--UCGGCGu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home