miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22311 5' -56.3 NC_005045.1 + 4196 0.66 0.548522
Target:  5'- cUGGCa-CUACGuGCaGUAGGCCGGGGc -3'
miRNA:   3'- -ACCGacGAUGUuCG-CGUUCGGCCUCu -5'
22311 5' -56.3 NC_005045.1 + 11522 0.66 0.526563
Target:  5'- cUGGCcuucCUGCGAcGCGguGGCCGGGu- -3'
miRNA:   3'- -ACCGac--GAUGUU-CGCguUCGGCCUcu -5'
22311 5' -56.3 NC_005045.1 + 27716 0.66 0.515706
Target:  5'- aGGCUGUU-CAGGUGCAuacGGCCcaGGGcGAu -3'
miRNA:   3'- aCCGACGAuGUUCGCGU---UCGG--CCU-CU- -5'
22311 5' -56.3 NC_005045.1 + 18613 0.66 0.512466
Target:  5'- gGGCgGC-ACGAGCGUccaccuggagccgucGCCGGAGGc -3'
miRNA:   3'- aCCGaCGaUGUUCGCGuu-------------CGGCCUCU- -5'
22311 5' -56.3 NC_005045.1 + 30367 0.66 0.503869
Target:  5'- uUGGC-GCUgaACucGCGCAgggccugGGCCGGGGc -3'
miRNA:   3'- -ACCGaCGA--UGuuCGCGU-------UCGGCCUCu -5'
22311 5' -56.3 NC_005045.1 + 23350 0.67 0.494273
Target:  5'- aUGGCcaguUGCUGC-GGCGCAcccaccugaccgGGCUGGAc- -3'
miRNA:   3'- -ACCG----ACGAUGuUCGCGU------------UCGGCCUcu -5'
22311 5' -56.3 NC_005045.1 + 23053 0.67 0.494273
Target:  5'- aGGCcGC-GCAGGCcCAGGCCgcgcaGGAGAc -3'
miRNA:   3'- aCCGaCGaUGUUCGcGUUCGG-----CCUCU- -5'
22311 5' -56.3 NC_005045.1 + 34249 0.67 0.48371
Target:  5'- gGGCcGCUcaGCAuuggcccGCGCAGguauGCCGGGGGa -3'
miRNA:   3'- aCCGaCGA--UGUu------CGCGUU----CGGCCUCU- -5'
22311 5' -56.3 NC_005045.1 + 12392 0.67 0.48371
Target:  5'- aGGUUGgU-CAGGUugauCAGGCCGGGGAa -3'
miRNA:   3'- aCCGACgAuGUUCGc---GUUCGGCCUCU- -5'
22311 5' -56.3 NC_005045.1 + 23282 0.67 0.459839
Target:  5'- cGGCaucacCUGCAcaugguucggggucGGCGCGgcAGCCGGGGGu -3'
miRNA:   3'- aCCGac---GAUGU--------------UCGCGU--UCGGCCUCU- -5'
22311 5' -56.3 NC_005045.1 + 2152 0.68 0.394124
Target:  5'- aGGCUGa-ACAGGCGCAAGCUa---- -3'
miRNA:   3'- aCCGACgaUGUUCGCGUUCGGccucu -5'
22311 5' -56.3 NC_005045.1 + 39562 0.69 0.384848
Target:  5'- cGaGCUGUaccUGCcGGCGCugauGGCUGGAGGc -3'
miRNA:   3'- aC-CGACG---AUGuUCGCGu---UCGGCCUCU- -5'
22311 5' -56.3 NC_005045.1 + 11182 0.69 0.384848
Target:  5'- cGGCcccacUGCgACAGGUGCAGGauGGGGAc -3'
miRNA:   3'- aCCG-----ACGaUGUUCGCGUUCggCCUCU- -5'
22311 5' -56.3 NC_005045.1 + 37496 0.69 0.357902
Target:  5'- cUGGgaGaCUccgGCAGGaCGUGAGCUGGAGAu -3'
miRNA:   3'- -ACCgaC-GA---UGUUC-GCGUUCGGCCUCU- -5'
22311 5' -56.3 NC_005045.1 + 41558 0.71 0.285226
Target:  5'- gUGGCUGCUGCGaucacAGCGguGGCCuuGGccuuGAa -3'
miRNA:   3'- -ACCGACGAUGU-----UCGCguUCGG--CCu---CU- -5'
22311 5' -56.3 NC_005045.1 + 22576 0.71 0.263732
Target:  5'- aUGGCUGCUAUccagcaGAGCuuGCAAGCCGuAGu -3'
miRNA:   3'- -ACCGACGAUG------UUCG--CGUUCGGCcUCu -5'
22311 5' -56.3 NC_005045.1 + 34553 0.72 0.237141
Target:  5'- gUGGCcaGCUcaGCAAGCGauacacGCCGGAGAa -3'
miRNA:   3'- -ACCGa-CGA--UGUUCGCguu---CGGCCUCU- -5'
22311 5' -56.3 NC_005045.1 + 32131 0.75 0.152434
Target:  5'- aUGGCUGCUGCuGGCggcgcuggGCAAGUCGGGu- -3'
miRNA:   3'- -ACCGACGAUGuUCG--------CGUUCGGCCUcu -5'
22311 5' -56.3 NC_005045.1 + 38398 0.76 0.124815
Target:  5'- aGGagaUGCgGCAGGCGCAGGC-GGAGAa -3'
miRNA:   3'- aCCg--ACGaUGUUCGCGUUCGgCCUCU- -5'
22311 5' -56.3 NC_005045.1 + 10587 1.09 0.000476
Target:  5'- cUGGCUGCUACAAGCGCAAGCCGGAGAu -3'
miRNA:   3'- -ACCGACGAUGUUCGCGUUCGGCCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.