Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22314 | 5' | -54.9 | NC_005045.1 | + | 5660 | 0.66 | 0.672544 |
Target: 5'- aGCGGCGUcaccugUGACGGUgguAAGGUGGaggugcGCCu -3' miRNA: 3'- cUGCUGCA------ACUGCCG---UUCCAUC------CGGu -5' |
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22314 | 5' | -54.9 | NC_005045.1 | + | 24985 | 0.66 | 0.672544 |
Target: 5'- cACGuuGaagUGACGGCccagcGGGUGGGCUg -3' miRNA: 3'- cUGCugCa--ACUGCCGu----UCCAUCCGGu -5' |
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22314 | 5' | -54.9 | NC_005045.1 | + | 39575 | 0.66 | 0.661318 |
Target: 5'- -cCGGCGcUGAUGGCugGAGGcUGGGCa- -3' miRNA: 3'- cuGCUGCaACUGCCG--UUCC-AUCCGgu -5' |
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22314 | 5' | -54.9 | NC_005045.1 | + | 30662 | 0.66 | 0.661318 |
Target: 5'- uGCGcACGUUGGCGGCGgcgaucuccagaAGGgcuucgcGGCCc -3' miRNA: 3'- cUGC-UGCAACUGCCGU------------UCCau-----CCGGu -5' |
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22314 | 5' | -54.9 | NC_005045.1 | + | 24716 | 0.66 | 0.638791 |
Target: 5'- gGACGAUcUUGuCGGCAGcuugcuuggcGGUcAGGCCGg -3' miRNA: 3'- -CUGCUGcAACuGCCGUU----------CCA-UCCGGU- -5' |
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22314 | 5' | -54.9 | NC_005045.1 | + | 30918 | 0.67 | 0.616239 |
Target: 5'- -uCGuCGUacucGACGGCGAGG-AGGCUg -3' miRNA: 3'- cuGCuGCAa---CUGCCGUUCCaUCCGGu -5' |
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22314 | 5' | -54.9 | NC_005045.1 | + | 29825 | 0.67 | 0.60498 |
Target: 5'- aGCGAgGUcugUGAUGGCAccGUuGGCCAc -3' miRNA: 3'- cUGCUgCA---ACUGCCGUucCAuCCGGU- -5' |
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22314 | 5' | -54.9 | NC_005045.1 | + | 7828 | 0.67 | 0.593745 |
Target: 5'- -uCGGCGcUGAaGGUgcGGUGGGCCu -3' miRNA: 3'- cuGCUGCaACUgCCGuuCCAUCCGGu -5' |
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22314 | 5' | -54.9 | NC_005045.1 | + | 40406 | 0.67 | 0.582544 |
Target: 5'- cACGcCGgUGACGGCGAGGgu-GCCu -3' miRNA: 3'- cUGCuGCaACUGCCGUUCCaucCGGu -5' |
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22314 | 5' | -54.9 | NC_005045.1 | + | 16687 | 0.68 | 0.53826 |
Target: 5'- -cCGGCGccGugGGCAAcguGGUcGGCCAg -3' miRNA: 3'- cuGCUGCaaCugCCGUU---CCAuCCGGU- -5' |
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22314 | 5' | -54.9 | NC_005045.1 | + | 10829 | 0.68 | 0.53826 |
Target: 5'- -uCGAUGUgGGCGuuGAGGUAGGCgCAg -3' miRNA: 3'- cuGCUGCAaCUGCcgUUCCAUCCG-GU- -5' |
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22314 | 5' | -54.9 | NC_005045.1 | + | 27440 | 0.71 | 0.371569 |
Target: 5'- cGGCGACGUaguggcuguccgugGACGGCGAcg-GGGCCAu -3' miRNA: 3'- -CUGCUGCAa-------------CUGCCGUUccaUCCGGU- -5' |
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22314 | 5' | -54.9 | NC_005045.1 | + | 30373 | 0.73 | 0.286594 |
Target: 5'- -uCGGCGUUGGCGcugaacucgcGCAGGGccUGGGCCGg -3' miRNA: 3'- cuGCUGCAACUGC----------CGUUCC--AUCCGGU- -5' |
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22314 | 5' | -54.9 | NC_005045.1 | + | 22263 | 0.86 | 0.03331 |
Target: 5'- cGACGGCGUgcgUGugGGCAAGGaGGGCCGc -3' miRNA: 3'- -CUGCUGCA---ACugCCGUUCCaUCCGGU- -5' |
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22314 | 5' | -54.9 | NC_005045.1 | + | 11350 | 1.08 | 0.000829 |
Target: 5'- uGACGACGUUGACGGCAAGGUAGGCCAg -3' miRNA: 3'- -CUGCUGCAACUGCCGUUCCAUCCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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