miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22314 5' -54.9 NC_005045.1 + 5660 0.66 0.672544
Target:  5'- aGCGGCGUcaccugUGACGGUgguAAGGUGGaggugcGCCu -3'
miRNA:   3'- cUGCUGCA------ACUGCCG---UUCCAUC------CGGu -5'
22314 5' -54.9 NC_005045.1 + 24985 0.66 0.672544
Target:  5'- cACGuuGaagUGACGGCccagcGGGUGGGCUg -3'
miRNA:   3'- cUGCugCa--ACUGCCGu----UCCAUCCGGu -5'
22314 5' -54.9 NC_005045.1 + 39575 0.66 0.661318
Target:  5'- -cCGGCGcUGAUGGCugGAGGcUGGGCa- -3'
miRNA:   3'- cuGCUGCaACUGCCG--UUCC-AUCCGgu -5'
22314 5' -54.9 NC_005045.1 + 30662 0.66 0.661318
Target:  5'- uGCGcACGUUGGCGGCGgcgaucuccagaAGGgcuucgcGGCCc -3'
miRNA:   3'- cUGC-UGCAACUGCCGU------------UCCau-----CCGGu -5'
22314 5' -54.9 NC_005045.1 + 24716 0.66 0.638791
Target:  5'- gGACGAUcUUGuCGGCAGcuugcuuggcGGUcAGGCCGg -3'
miRNA:   3'- -CUGCUGcAACuGCCGUU----------CCA-UCCGGU- -5'
22314 5' -54.9 NC_005045.1 + 30918 0.67 0.616239
Target:  5'- -uCGuCGUacucGACGGCGAGG-AGGCUg -3'
miRNA:   3'- cuGCuGCAa---CUGCCGUUCCaUCCGGu -5'
22314 5' -54.9 NC_005045.1 + 29825 0.67 0.60498
Target:  5'- aGCGAgGUcugUGAUGGCAccGUuGGCCAc -3'
miRNA:   3'- cUGCUgCA---ACUGCCGUucCAuCCGGU- -5'
22314 5' -54.9 NC_005045.1 + 7828 0.67 0.593745
Target:  5'- -uCGGCGcUGAaGGUgcGGUGGGCCu -3'
miRNA:   3'- cuGCUGCaACUgCCGuuCCAUCCGGu -5'
22314 5' -54.9 NC_005045.1 + 40406 0.67 0.582544
Target:  5'- cACGcCGgUGACGGCGAGGgu-GCCu -3'
miRNA:   3'- cUGCuGCaACUGCCGUUCCaucCGGu -5'
22314 5' -54.9 NC_005045.1 + 16687 0.68 0.53826
Target:  5'- -cCGGCGccGugGGCAAcguGGUcGGCCAg -3'
miRNA:   3'- cuGCUGCaaCugCCGUU---CCAuCCGGU- -5'
22314 5' -54.9 NC_005045.1 + 10829 0.68 0.53826
Target:  5'- -uCGAUGUgGGCGuuGAGGUAGGCgCAg -3'
miRNA:   3'- cuGCUGCAaCUGCcgUUCCAUCCG-GU- -5'
22314 5' -54.9 NC_005045.1 + 27440 0.71 0.371569
Target:  5'- cGGCGACGUaguggcuguccgugGACGGCGAcg-GGGCCAu -3'
miRNA:   3'- -CUGCUGCAa-------------CUGCCGUUccaUCCGGU- -5'
22314 5' -54.9 NC_005045.1 + 30373 0.73 0.286594
Target:  5'- -uCGGCGUUGGCGcugaacucgcGCAGGGccUGGGCCGg -3'
miRNA:   3'- cuGCUGCAACUGC----------CGUUCC--AUCCGGU- -5'
22314 5' -54.9 NC_005045.1 + 22263 0.86 0.03331
Target:  5'- cGACGGCGUgcgUGugGGCAAGGaGGGCCGc -3'
miRNA:   3'- -CUGCUGCA---ACugCCGUUCCaUCCGGU- -5'
22314 5' -54.9 NC_005045.1 + 11350 1.08 0.000829
Target:  5'- uGACGACGUUGACGGCAAGGUAGGCCAg -3'
miRNA:   3'- -CUGCUGCAACUGCCGUUCCAUCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.