miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22315 5' -55.8 NC_005045.1 + 41579 0.67 0.523156
Target:  5'- cCGCCcUCGCCGcccagggcaguGGCUGcuGCGAUCAcAGCg -3'
miRNA:   3'- -GUGGuAGUGGC-----------UCGAC--CGCUGGU-UCG- -5'
22315 5' -55.8 NC_005045.1 + 36817 0.67 0.512442
Target:  5'- aACCugAUCACCGAcCUGGCG-CUggAAGCc -3'
miRNA:   3'- gUGG--UAGUGGCUcGACCGCuGG--UUCG- -5'
22315 5' -55.8 NC_005045.1 + 4759 0.67 0.512442
Target:  5'- cCACCA-CACCGccCUGGCcaagcuGACCGAGg -3'
miRNA:   3'- -GUGGUaGUGGCucGACCG------CUGGUUCg -5'
22315 5' -55.8 NC_005045.1 + 38666 0.68 0.498652
Target:  5'- gCugCAUCcacgucaucuugaaGCCGAGgaacagcaUGGCGuCCAGGCa -3'
miRNA:   3'- -GugGUAG--------------UGGCUCg-------ACCGCuGGUUCG- -5'
22315 5' -55.8 NC_005045.1 + 10297 0.68 0.491295
Target:  5'- gACCAagGCCGAGCUGaaGugCcuGCa -3'
miRNA:   3'- gUGGUagUGGCUCGACcgCugGuuCG- -5'
22315 5' -55.8 NC_005045.1 + 25291 0.68 0.491295
Target:  5'- gCGCaagAUCGgCGAGCUGcCGACCcuGAGCa -3'
miRNA:   3'- -GUGg--UAGUgGCUCGACcGCUGG--UUCG- -5'
22315 5' -55.8 NC_005045.1 + 22539 0.68 0.480874
Target:  5'- aGCCGUCcgugcuuaCGAGCgUGGCGACUAcaacaagauGGCu -3'
miRNA:   3'- gUGGUAGug------GCUCG-ACCGCUGGU---------UCG- -5'
22315 5' -55.8 NC_005045.1 + 19478 0.68 0.480874
Target:  5'- gCGCCAUCGCaggucugcugGAGCUGcgcGCGGCCuauGCc -3'
miRNA:   3'- -GUGGUAGUGg---------CUCGAC---CGCUGGuu-CG- -5'
22315 5' -55.8 NC_005045.1 + 17398 0.68 0.470561
Target:  5'- gCACUAUCACUGcggcGGCUgcGGCGGCUggagucguGGGCg -3'
miRNA:   3'- -GUGGUAGUGGC----UCGA--CCGCUGG--------UUCG- -5'
22315 5' -55.8 NC_005045.1 + 2135 0.68 0.460363
Target:  5'- uGCCuuGUCGCggCGAGCcuUGGCGGCUuuGCg -3'
miRNA:   3'- gUGG--UAGUG--GCUCG--ACCGCUGGuuCG- -5'
22315 5' -55.8 NC_005045.1 + 8465 0.68 0.450282
Target:  5'- aGCUG-CGCCG-GCUGaGCGACgAGGCc -3'
miRNA:   3'- gUGGUaGUGGCuCGAC-CGCUGgUUCG- -5'
22315 5' -55.8 NC_005045.1 + 23907 0.68 0.450282
Target:  5'- -uCCAUCAgCCGAccgaUGGCGGCCuugguGGCa -3'
miRNA:   3'- guGGUAGU-GGCUcg--ACCGCUGGu----UCG- -5'
22315 5' -55.8 NC_005045.1 + 28484 0.69 0.440324
Target:  5'- aGCCGUgGCCucGCaGGUggaGGCCAAGCg -3'
miRNA:   3'- gUGGUAgUGGcuCGaCCG---CUGGUUCG- -5'
22315 5' -55.8 NC_005045.1 + 39573 0.69 0.440324
Target:  5'- uGCCggCGCUGAugGCUGGaGGCUggGCa -3'
miRNA:   3'- gUGGuaGUGGCU--CGACCgCUGGuuCG- -5'
22315 5' -55.8 NC_005045.1 + 40348 0.69 0.440324
Target:  5'- uCGCCGUCACCG-GCgUGGgGAUCGc-- -3'
miRNA:   3'- -GUGGUAGUGGCuCG-ACCgCUGGUucg -5'
22315 5' -55.8 NC_005045.1 + 16878 0.69 0.430493
Target:  5'- uGCCAgggCGCCccGCUGGaCGACCu-GCa -3'
miRNA:   3'- gUGGUa--GUGGcuCGACC-GCUGGuuCG- -5'
22315 5' -55.8 NC_005045.1 + 4665 0.69 0.410274
Target:  5'- cCACCAcCACCGAaaccaccaccgcuGCUaccccgGGCG-CCAAGCu -3'
miRNA:   3'- -GUGGUaGUGGCU-------------CGA------CCGCuGGUUCG- -5'
22315 5' -55.8 NC_005045.1 + 32346 0.69 0.401791
Target:  5'- aGCCAUgacCGCCGAGgaGGCcGCCGcacgcGGCu -3'
miRNA:   3'- gUGGUA---GUGGCUCgaCCGcUGGU-----UCG- -5'
22315 5' -55.8 NC_005045.1 + 16052 0.7 0.383345
Target:  5'- gCACCuUCACCuugaAGCUGuG-GGCCGAGCa -3'
miRNA:   3'- -GUGGuAGUGGc---UCGAC-CgCUGGUUCG- -5'
22315 5' -55.8 NC_005045.1 + 6962 0.7 0.383345
Target:  5'- gGCC---GCCGAGCUGGCugguGCCGAGa -3'
miRNA:   3'- gUGGuagUGGCUCGACCGc---UGGUUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.