miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22317 5' -55.8 NC_005045.1 + 25487 0.66 0.660633
Target:  5'- -cCGGAuuccccGGACcuccaguGGGACGGCCUGGggGu -3'
miRNA:   3'- caGCUU------CCUGc------UCCUGCUGGGCCuuC- -5'
22317 5' -55.8 NC_005045.1 + 13799 0.66 0.649607
Target:  5'- -cCGAGGGAaacccugacguuCGuGGACcACCCGGAc- -3'
miRNA:   3'- caGCUUCCU------------GCuCCUGcUGGGCCUuc -5'
22317 5' -55.8 NC_005045.1 + 16126 0.66 0.627515
Target:  5'- -gUGAAGGGCGAGGccgugauggaucACGACCaCGaGAc- -3'
miRNA:   3'- caGCUUCCUGCUCC------------UGCUGG-GC-CUuc -5'
22317 5' -55.8 NC_005045.1 + 8554 0.66 0.61647
Target:  5'- -gCGGAGGAgcAGGGgGACCaCGGAAu -3'
miRNA:   3'- caGCUUCCUgcUCCUgCUGG-GCCUUc -5'
22317 5' -55.8 NC_005045.1 + 31320 0.67 0.594431
Target:  5'- --aGAuGGGCGaAGGGCGuGCCCGGcAGu -3'
miRNA:   3'- cagCUuCCUGC-UCCUGC-UGGGCCuUC- -5'
22317 5' -55.8 NC_005045.1 + 42137 0.67 0.594431
Target:  5'- -aCGggGGAaggGuGGGCGugUCGGAGu -3'
miRNA:   3'- caGCuuCCUg--CuCCUGCugGGCCUUc -5'
22317 5' -55.8 NC_005045.1 + 74 0.67 0.594431
Target:  5'- -aCGggGGAaggGuGGGCGugUCGGAGu -3'
miRNA:   3'- caGCuuCCUg--CuCCUGCugGGCCUUc -5'
22317 5' -55.8 NC_005045.1 + 17156 0.68 0.540043
Target:  5'- uUCGAucuguGGGCGgcaugcuugcAGGAUaACCCGGAAGc -3'
miRNA:   3'- cAGCUu----CCUGC----------UCCUGcUGGGCCUUC- -5'
22317 5' -55.8 NC_005045.1 + 14118 0.68 0.487434
Target:  5'- uGUUGGccAGGGCGAGGGCGGCuuGcaGAGc -3'
miRNA:   3'- -CAGCU--UCCUGCUCCUGCUGggCc-UUC- -5'
22317 5' -55.8 NC_005045.1 + 15784 0.75 0.216211
Target:  5'- -aUGAcGGACGAGGACGAggccaucgacaugauCCUGGAAGc -3'
miRNA:   3'- caGCUuCCUGCUCCUGCU---------------GGGCCUUC- -5'
22317 5' -55.8 NC_005045.1 + 27063 0.83 0.055343
Target:  5'- --aGGAGGACGAGG-CGACCCuGGAAGg -3'
miRNA:   3'- cagCUUCCUGCUCCuGCUGGG-CCUUC- -5'
22317 5' -55.8 NC_005045.1 + 12695 1.08 0.000902
Target:  5'- cGUCGAAGGACGAGGACGACCCGGAAGc -3'
miRNA:   3'- -CAGCUUCCUGCUCCUGCUGGGCCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.