Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22317 | 5' | -55.8 | NC_005045.1 | + | 25487 | 0.66 | 0.660633 |
Target: 5'- -cCGGAuuccccGGACcuccaguGGGACGGCCUGGggGu -3' miRNA: 3'- caGCUU------CCUGc------UCCUGCUGGGCCuuC- -5' |
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22317 | 5' | -55.8 | NC_005045.1 | + | 13799 | 0.66 | 0.649607 |
Target: 5'- -cCGAGGGAaacccugacguuCGuGGACcACCCGGAc- -3' miRNA: 3'- caGCUUCCU------------GCuCCUGcUGGGCCUuc -5' |
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22317 | 5' | -55.8 | NC_005045.1 | + | 16126 | 0.66 | 0.627515 |
Target: 5'- -gUGAAGGGCGAGGccgugauggaucACGACCaCGaGAc- -3' miRNA: 3'- caGCUUCCUGCUCC------------UGCUGG-GC-CUuc -5' |
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22317 | 5' | -55.8 | NC_005045.1 | + | 8554 | 0.66 | 0.61647 |
Target: 5'- -gCGGAGGAgcAGGGgGACCaCGGAAu -3' miRNA: 3'- caGCUUCCUgcUCCUgCUGG-GCCUUc -5' |
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22317 | 5' | -55.8 | NC_005045.1 | + | 31320 | 0.67 | 0.594431 |
Target: 5'- --aGAuGGGCGaAGGGCGuGCCCGGcAGu -3' miRNA: 3'- cagCUuCCUGC-UCCUGC-UGGGCCuUC- -5' |
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22317 | 5' | -55.8 | NC_005045.1 | + | 42137 | 0.67 | 0.594431 |
Target: 5'- -aCGggGGAaggGuGGGCGugUCGGAGu -3' miRNA: 3'- caGCuuCCUg--CuCCUGCugGGCCUUc -5' |
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22317 | 5' | -55.8 | NC_005045.1 | + | 74 | 0.67 | 0.594431 |
Target: 5'- -aCGggGGAaggGuGGGCGugUCGGAGu -3' miRNA: 3'- caGCuuCCUg--CuCCUGCugGGCCUUc -5' |
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22317 | 5' | -55.8 | NC_005045.1 | + | 17156 | 0.68 | 0.540043 |
Target: 5'- uUCGAucuguGGGCGgcaugcuugcAGGAUaACCCGGAAGc -3' miRNA: 3'- cAGCUu----CCUGC----------UCCUGcUGGGCCUUC- -5' |
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22317 | 5' | -55.8 | NC_005045.1 | + | 14118 | 0.68 | 0.487434 |
Target: 5'- uGUUGGccAGGGCGAGGGCGGCuuGcaGAGc -3' miRNA: 3'- -CAGCU--UCCUGCUCCUGCUGggCc-UUC- -5' |
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22317 | 5' | -55.8 | NC_005045.1 | + | 15784 | 0.75 | 0.216211 |
Target: 5'- -aUGAcGGACGAGGACGAggccaucgacaugauCCUGGAAGc -3' miRNA: 3'- caGCUuCCUGCUCCUGCU---------------GGGCCUUC- -5' |
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22317 | 5' | -55.8 | NC_005045.1 | + | 27063 | 0.83 | 0.055343 |
Target: 5'- --aGGAGGACGAGG-CGACCCuGGAAGg -3' miRNA: 3'- cagCUUCCUGCUCCuGCUGGG-CCUUC- -5' |
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22317 | 5' | -55.8 | NC_005045.1 | + | 12695 | 1.08 | 0.000902 |
Target: 5'- cGUCGAAGGACGAGGACGACCCGGAAGc -3' miRNA: 3'- -CAGCUUCCUGCUCCUGCUGGGCCUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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