miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22319 3' -60.8 NC_005045.1 + 4959 0.66 0.355777
Target:  5'- aCAGCGCaccGGCcaAGCuGCUGGacgugaaGCCAGCg -3'
miRNA:   3'- cGUCGCG---CCG--UCG-UGACCac-----CGGUCG- -5'
22319 3' -60.8 NC_005045.1 + 32133 0.66 0.355777
Target:  5'- gGCuGCuGCuGGCGGCGCUGGgcaaGUCGGg -3'
miRNA:   3'- -CGuCG-CG-CCGUCGUGACCac--CGGUCg -5'
22319 3' -60.8 NC_005045.1 + 37439 0.66 0.354936
Target:  5'- gGCGGCGCucaaguaGGCGGUcUUGGUcuGGCCguuauuguccGGCg -3'
miRNA:   3'- -CGUCGCG-------CCGUCGuGACCA--CCGG----------UCG- -5'
22319 3' -60.8 NC_005045.1 + 27717 0.66 0.347433
Target:  5'- gGCGGCGUaucgaGGCGaccGuCGCUGGUGaGCUggAGCu -3'
miRNA:   3'- -CGUCGCG-----CCGU---C-GUGACCAC-CGG--UCG- -5'
22319 3' -60.8 NC_005045.1 + 1792 0.66 0.347433
Target:  5'- gGUAGCGUacuGGCGGgACUGGgaaGCCAa- -3'
miRNA:   3'- -CGUCGCG---CCGUCgUGACCac-CGGUcg -5'
22319 3' -60.8 NC_005045.1 + 39145 0.66 0.339231
Target:  5'- cGC-GCGUGGCuuccugaugcGCAuCUGGccgGGCCGGUu -3'
miRNA:   3'- -CGuCGCGCCGu---------CGU-GACCa--CCGGUCG- -5'
22319 3' -60.8 NC_005045.1 + 8627 0.66 0.339231
Target:  5'- cCGGgGCcuCGGUGCUGGUGG-CAGCg -3'
miRNA:   3'- cGUCgCGccGUCGUGACCACCgGUCG- -5'
22319 3' -60.8 NC_005045.1 + 23041 0.66 0.32325
Target:  5'- aGCAGCGUcagcaGGCcGCGCaGGcccaGGCCGcGCa -3'
miRNA:   3'- -CGUCGCG-----CCGuCGUGaCCa---CCGGU-CG- -5'
22319 3' -60.8 NC_005045.1 + 34003 0.66 0.318566
Target:  5'- uGUAGCGgacacggcauucaucCGGCAgGCGCUGGaggaGGCCAa- -3'
miRNA:   3'- -CGUCGC---------------GCCGU-CGUGACCa---CCGGUcg -5'
22319 3' -60.8 NC_005045.1 + 11627 0.66 0.315473
Target:  5'- -aAGUaCGGCGGCACccacaaGGUGGaCGGCa -3'
miRNA:   3'- cgUCGcGCCGUCGUGa-----CCACCgGUCG- -5'
22319 3' -60.8 NC_005045.1 + 4812 0.67 0.310874
Target:  5'- gGCGGUGUGGUGGaagaccacguUAUUgcggaagucuucgacGGUGGCCGGCu -3'
miRNA:   3'- -CGUCGCGCCGUC----------GUGA---------------CCACCGGUCG- -5'
22319 3' -60.8 NC_005045.1 + 32657 0.67 0.307837
Target:  5'- uGCAGgGCGGCGaCACU----GCCAGCu -3'
miRNA:   3'- -CGUCgCGCCGUcGUGAccacCGGUCG- -5'
22319 3' -60.8 NC_005045.1 + 16437 0.67 0.292992
Target:  5'- gGCGGCuGCcuGcCGGCGCU--UGGCCAGCu -3'
miRNA:   3'- -CGUCG-CGc-C-GUCGUGAccACCGGUCG- -5'
22319 3' -60.8 NC_005045.1 + 11878 0.67 0.278712
Target:  5'- uCAGgGCcucGCAGCGCUccaGGUaGCCAGCc -3'
miRNA:   3'- cGUCgCGc--CGUCGUGA---CCAcCGGUCG- -5'
22319 3' -60.8 NC_005045.1 + 3665 0.67 0.271783
Target:  5'- gGCGGCGUGGUcGCuauCUGcccGGCCuGCg -3'
miRNA:   3'- -CGUCGCGCCGuCGu--GACca-CCGGuCG- -5'
22319 3' -60.8 NC_005045.1 + 32235 0.67 0.271783
Target:  5'- cGCuGGCGUGGguGCucuGCUGG-GGUCugguGCg -3'
miRNA:   3'- -CG-UCGCGCCguCG---UGACCaCCGGu---CG- -5'
22319 3' -60.8 NC_005045.1 + 8964 0.68 0.267692
Target:  5'- gGCGGUGguguuuugggacugaUGGCc-CACgucaagGGUGGCCAGCg -3'
miRNA:   3'- -CGUCGC---------------GCCGucGUGa-----CCACCGGUCG- -5'
22319 3' -60.8 NC_005045.1 + 34822 0.68 0.25834
Target:  5'- gGUGGCGCgGGCGGCGCaGGgGGaugaAGCg -3'
miRNA:   3'- -CGUCGCG-CCGUCGUGaCCaCCgg--UCG- -5'
22319 3' -60.8 NC_005045.1 + 29453 0.68 0.245446
Target:  5'- cCGGCGacgaacuguccCGGCAGCucagcCUGGaagaGGCCGGCc -3'
miRNA:   3'- cGUCGC-----------GCCGUCGu----GACCa---CCGGUCG- -5'
22319 3' -60.8 NC_005045.1 + 14135 0.68 0.245445
Target:  5'- uGCGGUcuCGGCAGCcUUGuUGGCCAGg -3'
miRNA:   3'- -CGUCGc-GCCGUCGuGACcACCGGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.