Results 1 - 20 of 41 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22319 | 3' | -60.8 | NC_005045.1 | + | 32133 | 0.66 | 0.355777 |
Target: 5'- gGCuGCuGCuGGCGGCGCUGGgcaaGUCGGg -3' miRNA: 3'- -CGuCG-CG-CCGUCGUGACCac--CGGUCg -5' |
|||||||
22319 | 3' | -60.8 | NC_005045.1 | + | 4959 | 0.66 | 0.355777 |
Target: 5'- aCAGCGCaccGGCcaAGCuGCUGGacgugaaGCCAGCg -3' miRNA: 3'- cGUCGCG---CCG--UCG-UGACCac-----CGGUCG- -5' |
|||||||
22319 | 3' | -60.8 | NC_005045.1 | + | 37439 | 0.66 | 0.354936 |
Target: 5'- gGCGGCGCucaaguaGGCGGUcUUGGUcuGGCCguuauuguccGGCg -3' miRNA: 3'- -CGUCGCG-------CCGUCGuGACCA--CCGG----------UCG- -5' |
|||||||
22319 | 3' | -60.8 | NC_005045.1 | + | 1792 | 0.66 | 0.347433 |
Target: 5'- gGUAGCGUacuGGCGGgACUGGgaaGCCAa- -3' miRNA: 3'- -CGUCGCG---CCGUCgUGACCac-CGGUcg -5' |
|||||||
22319 | 3' | -60.8 | NC_005045.1 | + | 27717 | 0.66 | 0.347433 |
Target: 5'- gGCGGCGUaucgaGGCGaccGuCGCUGGUGaGCUggAGCu -3' miRNA: 3'- -CGUCGCG-----CCGU---C-GUGACCAC-CGG--UCG- -5' |
|||||||
22319 | 3' | -60.8 | NC_005045.1 | + | 39145 | 0.66 | 0.339231 |
Target: 5'- cGC-GCGUGGCuuccugaugcGCAuCUGGccgGGCCGGUu -3' miRNA: 3'- -CGuCGCGCCGu---------CGU-GACCa--CCGGUCG- -5' |
|||||||
22319 | 3' | -60.8 | NC_005045.1 | + | 8627 | 0.66 | 0.339231 |
Target: 5'- cCGGgGCcuCGGUGCUGGUGG-CAGCg -3' miRNA: 3'- cGUCgCGccGUCGUGACCACCgGUCG- -5' |
|||||||
22319 | 3' | -60.8 | NC_005045.1 | + | 23041 | 0.66 | 0.32325 |
Target: 5'- aGCAGCGUcagcaGGCcGCGCaGGcccaGGCCGcGCa -3' miRNA: 3'- -CGUCGCG-----CCGuCGUGaCCa---CCGGU-CG- -5' |
|||||||
22319 | 3' | -60.8 | NC_005045.1 | + | 34003 | 0.66 | 0.318566 |
Target: 5'- uGUAGCGgacacggcauucaucCGGCAgGCGCUGGaggaGGCCAa- -3' miRNA: 3'- -CGUCGC---------------GCCGU-CGUGACCa---CCGGUcg -5' |
|||||||
22319 | 3' | -60.8 | NC_005045.1 | + | 11627 | 0.66 | 0.315473 |
Target: 5'- -aAGUaCGGCGGCACccacaaGGUGGaCGGCa -3' miRNA: 3'- cgUCGcGCCGUCGUGa-----CCACCgGUCG- -5' |
|||||||
22319 | 3' | -60.8 | NC_005045.1 | + | 4812 | 0.67 | 0.310874 |
Target: 5'- gGCGGUGUGGUGGaagaccacguUAUUgcggaagucuucgacGGUGGCCGGCu -3' miRNA: 3'- -CGUCGCGCCGUC----------GUGA---------------CCACCGGUCG- -5' |
|||||||
22319 | 3' | -60.8 | NC_005045.1 | + | 32657 | 0.67 | 0.307837 |
Target: 5'- uGCAGgGCGGCGaCACU----GCCAGCu -3' miRNA: 3'- -CGUCgCGCCGUcGUGAccacCGGUCG- -5' |
|||||||
22319 | 3' | -60.8 | NC_005045.1 | + | 16437 | 0.67 | 0.292992 |
Target: 5'- gGCGGCuGCcuGcCGGCGCU--UGGCCAGCu -3' miRNA: 3'- -CGUCG-CGc-C-GUCGUGAccACCGGUCG- -5' |
|||||||
22319 | 3' | -60.8 | NC_005045.1 | + | 11878 | 0.67 | 0.278712 |
Target: 5'- uCAGgGCcucGCAGCGCUccaGGUaGCCAGCc -3' miRNA: 3'- cGUCgCGc--CGUCGUGA---CCAcCGGUCG- -5' |
|||||||
22319 | 3' | -60.8 | NC_005045.1 | + | 32235 | 0.67 | 0.271783 |
Target: 5'- cGCuGGCGUGGguGCucuGCUGG-GGUCugguGCg -3' miRNA: 3'- -CG-UCGCGCCguCG---UGACCaCCGGu---CG- -5' |
|||||||
22319 | 3' | -60.8 | NC_005045.1 | + | 3665 | 0.67 | 0.271783 |
Target: 5'- gGCGGCGUGGUcGCuauCUGcccGGCCuGCg -3' miRNA: 3'- -CGUCGCGCCGuCGu--GACca-CCGGuCG- -5' |
|||||||
22319 | 3' | -60.8 | NC_005045.1 | + | 8964 | 0.68 | 0.267692 |
Target: 5'- gGCGGUGguguuuugggacugaUGGCc-CACgucaagGGUGGCCAGCg -3' miRNA: 3'- -CGUCGC---------------GCCGucGUGa-----CCACCGGUCG- -5' |
|||||||
22319 | 3' | -60.8 | NC_005045.1 | + | 34822 | 0.68 | 0.25834 |
Target: 5'- gGUGGCGCgGGCGGCGCaGGgGGaugaAGCg -3' miRNA: 3'- -CGUCGCG-CCGUCGUGaCCaCCgg--UCG- -5' |
|||||||
22319 | 3' | -60.8 | NC_005045.1 | + | 29453 | 0.68 | 0.245446 |
Target: 5'- cCGGCGacgaacuguccCGGCAGCucagcCUGGaagaGGCCGGCc -3' miRNA: 3'- cGUCGC-----------GCCGUCGu----GACCa---CCGGUCG- -5' |
|||||||
22319 | 3' | -60.8 | NC_005045.1 | + | 14135 | 0.68 | 0.245445 |
Target: 5'- uGCGGUcuCGGCAGCcUUGuUGGCCAGg -3' miRNA: 3'- -CGUCGc-GCCGUCGuGACcACCGGUCg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home