Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22322 | 5' | -55.7 | NC_005045.1 | + | 15535 | 1.08 | 0.00079 |
Target: 5'- aAGGACCUGCGGAUGACGAUCUACCCGu -3' miRNA: 3'- -UCCUGGACGCCUACUGCUAGAUGGGC- -5' |
|||||||
22322 | 5' | -55.7 | NC_005045.1 | + | 135 | 0.73 | 0.27058 |
Target: 5'- cGGGAgugucaacCCUGCGG-UGGCGuggCUGCCCa -3' miRNA: 3'- -UCCU--------GGACGCCuACUGCua-GAUGGGc -5' |
|||||||
22322 | 5' | -55.7 | NC_005045.1 | + | 42198 | 0.73 | 0.27058 |
Target: 5'- cGGGAgugucaacCCUGCGG-UGGCGuggCUGCCCa -3' miRNA: 3'- -UCCU--------GGACGCCuACUGCua-GAUGGGc -5' |
|||||||
22322 | 5' | -55.7 | NC_005045.1 | + | 24713 | 0.71 | 0.364643 |
Target: 5'- -cGACCUGgGcGAUG-CGGUCUACuCCGa -3' miRNA: 3'- ucCUGGACgC-CUACuGCUAGAUG-GGC- -5' |
|||||||
22322 | 5' | -55.7 | NC_005045.1 | + | 23110 | 0.68 | 0.51031 |
Target: 5'- uGGGCCUGCGcGGccugcUGACGcugCUGCuCCGc -3' miRNA: 3'- uCCUGGACGC-CU-----ACUGCua-GAUG-GGC- -5' |
|||||||
22322 | 5' | -55.7 | NC_005045.1 | + | 38227 | 0.66 | 0.597253 |
Target: 5'- uGGGCCUGCuacAUGAgcUGGUCUGCaCCGc -3' miRNA: 3'- uCCUGGACGcc-UACU--GCUAGAUG-GGC- -5' |
|||||||
22322 | 5' | -55.7 | NC_005045.1 | + | 13530 | 0.66 | 0.608345 |
Target: 5'- aAGGGCgUGCGcGAcaucaUGGcCGAcgCUGCCCGc -3' miRNA: 3'- -UCCUGgACGC-CU-----ACU-GCUa-GAUGGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home