miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22323 3' -51.7 NC_005045.1 + 23537 0.66 0.856297
Target:  5'- aGUGAAGGcCGGCgg-CGGCGggaCUUCCa -3'
miRNA:   3'- gUACUUCU-GCCGgaaGCUGUa--GGAGG- -5'
22323 3' -51.7 NC_005045.1 + 40748 0.66 0.847507
Target:  5'- aAUGAgcAGACcGCCUU-GACGUUCUUCu -3'
miRNA:   3'- gUACU--UCUGcCGGAAgCUGUAGGAGG- -5'
22323 3' -51.7 NC_005045.1 + 25127 0.66 0.838473
Target:  5'- -cUGAAGGguauCGgcGCCUUCGACAUCa-CCg -3'
miRNA:   3'- guACUUCU----GC--CGGAAGCUGUAGgaGG- -5'
22323 3' -51.7 NC_005045.1 + 14123 0.66 0.838473
Target:  5'- --cGguGGCGGCggUCG-CAUCUUCCc -3'
miRNA:   3'- guaCuuCUGCCGgaAGCuGUAGGAGG- -5'
22323 3' -51.7 NC_005045.1 + 15855 0.66 0.829205
Target:  5'- uCAUGucGAUGGCCU----CGUCCUCg -3'
miRNA:   3'- -GUACuuCUGCCGGAagcuGUAGGAGg -5'
22323 3' -51.7 NC_005045.1 + 23534 0.66 0.829205
Target:  5'- --cGAAGGCGaCCcgcagUUGGCAcCCUCCa -3'
miRNA:   3'- guaCUUCUGCcGGa----AGCUGUaGGAGG- -5'
22323 3' -51.7 NC_005045.1 + 12807 0.66 0.827324
Target:  5'- gGUGAuguuGGCGGCCcugUCGAaggaucggaaCCUCCu -3'
miRNA:   3'- gUACUu---CUGCCGGa--AGCUgua-------GGAGG- -5'
22323 3' -51.7 NC_005045.1 + 27352 0.67 0.810008
Target:  5'- gCAUG-AGAUGGCCccgUCGcCGUCCa-- -3'
miRNA:   3'- -GUACuUCUGCCGGa--AGCuGUAGGagg -5'
22323 3' -51.7 NC_005045.1 + 3173 0.67 0.800102
Target:  5'- gAUG-GGACGGCCaUUCGcACAgCCUUUg -3'
miRNA:   3'- gUACuUCUGCCGG-AAGC-UGUaGGAGG- -5'
22323 3' -51.7 NC_005045.1 + 6824 0.68 0.7555
Target:  5'- --gGGAGGCGugcuggcccucgguGCCUUCGACcuGUCCggCCu -3'
miRNA:   3'- guaCUUCUGC--------------CGGAAGCUG--UAGGa-GG- -5'
22323 3' -51.7 NC_005045.1 + 13255 0.68 0.737117
Target:  5'- -cUGAAGGC-GCCUgcCGGCAUCUggUCCu -3'
miRNA:   3'- guACUUCUGcCGGAa-GCUGUAGG--AGG- -5'
22323 3' -51.7 NC_005045.1 + 20857 0.68 0.737117
Target:  5'- --cGccGAcCGGCCUggaacUgGAUAUCCUCCa -3'
miRNA:   3'- guaCuuCU-GCCGGA-----AgCUGUAGGAGG- -5'
22323 3' -51.7 NC_005045.1 + 10098 0.68 0.715073
Target:  5'- -uUGAuGAUGGCC-UCGACggCCUUg -3'
miRNA:   3'- guACUuCUGCCGGaAGCUGuaGGAGg -5'
22323 3' -51.7 NC_005045.1 + 12130 0.69 0.703912
Target:  5'- --cGAAGuCGGCUUUCucCAUCCggCCa -3'
miRNA:   3'- guaCUUCuGCCGGAAGcuGUAGGa-GG- -5'
22323 3' -51.7 NC_005045.1 + 15792 0.7 0.647222
Target:  5'- --cGAGGACgaGGCCaUCGACAUgaUCCu -3'
miRNA:   3'- guaCUUCUG--CCGGaAGCUGUAggAGG- -5'
22323 3' -51.7 NC_005045.1 + 28401 0.7 0.601524
Target:  5'- -cUGAAGACGGaCC-UCGACAaCCUg- -3'
miRNA:   3'- guACUUCUGCC-GGaAGCUGUaGGAgg -5'
22323 3' -51.7 NC_005045.1 + 34844 0.71 0.578802
Target:  5'- gAUGAAG-CGGcCCUUCGA-GUgCUCCa -3'
miRNA:   3'- gUACUUCuGCC-GGAAGCUgUAgGAGG- -5'
22323 3' -51.7 NC_005045.1 + 6497 0.73 0.458963
Target:  5'- --gGAAGACGGCUU----CGUCCUCCa -3'
miRNA:   3'- guaCUUCUGCCGGAagcuGUAGGAGG- -5'
22323 3' -51.7 NC_005045.1 + 20325 0.74 0.399361
Target:  5'- cCAUGcugucguGGAUGGCCUggaucggGAUAUCCUCCg -3'
miRNA:   3'- -GUACu------UCUGCCGGAag-----CUGUAGGAGG- -5'
22323 3' -51.7 NC_005045.1 + 29898 0.74 0.380621
Target:  5'- uCAUGAacgAGAUGGCCUga-GCAUCgCUCCa -3'
miRNA:   3'- -GUACU---UCUGCCGGAagcUGUAG-GAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.