Results 21 - 22 of 22 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22323 | 3' | -51.7 | NC_005045.1 | + | 6446 | 0.75 | 0.371474 |
Target: 5'- gCGUGAAGugGuauuGCaugUUCGugAUCCUCCa -3' miRNA: 3'- -GUACUUCugC----CGg--AAGCugUAGGAGG- -5' |
|||||||
22323 | 3' | -51.7 | NC_005045.1 | + | 23537 | 0.66 | 0.856297 |
Target: 5'- aGUGAAGGcCGGCgg-CGGCGggaCUUCCa -3' miRNA: 3'- gUACUUCU-GCCGgaaGCUGUa--GGAGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home