miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22323 5' -57.5 NC_005045.1 + 28530 0.66 0.514944
Target:  5'- gGCGGAagcgcCGAGGcucaggcCGGGGCguUCGGCGUc -3'
miRNA:   3'- -UGCCU-----GCUCCu------GCUCCGguAGCUGUA- -5'
22323 5' -57.5 NC_005045.1 + 41289 0.66 0.503388
Target:  5'- aGCGGGCGccGGGGCGguugcacAGGCUGUcaaCGACAg -3'
miRNA:   3'- -UGCCUGC--UCCUGC-------UCCGGUA---GCUGUa -5'
22323 5' -57.5 NC_005045.1 + 28045 0.66 0.494017
Target:  5'- cACGGGuCGAGGucAUGggcAGGCCAUUGugGUc -3'
miRNA:   3'- -UGCCU-GCUCC--UGC---UCCGGUAGCugUA- -5'
22323 5' -57.5 NC_005045.1 + 12701 0.66 0.4837
Target:  5'- -aGGACGAGGACGAcccGGaaGcCGGCAg -3'
miRNA:   3'- ugCCUGCUCCUGCU---CCggUaGCUGUa -5'
22323 5' -57.5 NC_005045.1 + 15233 0.68 0.386976
Target:  5'- gUGGccgcagccACGuAGG-CGGGGCCGUCGGCGUc -3'
miRNA:   3'- uGCC--------UGC-UCCuGCUCCGGUAGCUGUA- -5'
22323 5' -57.5 NC_005045.1 + 15823 0.69 0.343627
Target:  5'- -gGGugGAGGAUGucgaAGGCCGUCuuCAUg -3'
miRNA:   3'- ugCCugCUCCUGC----UCCGGUAGcuGUA- -5'
22323 5' -57.5 NC_005045.1 + 35243 0.69 0.335387
Target:  5'- aGCGGauacuggaauGCGAGGAgCGAGGCCA-CGcCAa -3'
miRNA:   3'- -UGCC----------UGCUCCU-GCUCCGGUaGCuGUa -5'
22323 5' -57.5 NC_005045.1 + 6203 0.69 0.327293
Target:  5'- aGCGGGCGAaGGCGGcGGCUAagGACAc -3'
miRNA:   3'- -UGCCUGCUcCUGCU-CCGGUagCUGUa -5'
22323 5' -57.5 NC_005045.1 + 9272 0.7 0.319345
Target:  5'- gAUGGACGGGaagccuucgaacGugGAGGCCAugauuaacuUCGACGc -3'
miRNA:   3'- -UGCCUGCUC------------CugCUCCGGU---------AGCUGUa -5'
22323 5' -57.5 NC_005045.1 + 27420 0.72 0.223137
Target:  5'- gUGGACGGcGACGGGGCCAUCu-CAUg -3'
miRNA:   3'- uGCCUGCUcCUGCUCCGGUAGcuGUA- -5'
22323 5' -57.5 NC_005045.1 + 33948 0.73 0.206027
Target:  5'- aGCGGGCGcGGGACaGGGCUAcCGGCAUc -3'
miRNA:   3'- -UGCCUGC-UCCUGcUCCGGUaGCUGUA- -5'
22323 5' -57.5 NC_005045.1 + 15786 1.06 0.000738
Target:  5'- gACGGACGAGGACGAGGCCAUCGACAUg -3'
miRNA:   3'- -UGCCUGCUCCUGCUCCGGUAGCUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.