miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22324 3' -53.6 NC_005045.1 + 16710 0.66 0.742506
Target:  5'- gGCCaggguccgaaggUGCUGAGCCuggacaucGAGACCU-CG-CCu -3'
miRNA:   3'- aUGG------------ACGAUUCGG--------CUCUGGAaGCaGG- -5'
22324 3' -53.6 NC_005045.1 + 6965 0.66 0.742506
Target:  5'- cGCCgagcugGCUGGuGCCGAGAUCUgaccugcuUCGaguUCCu -3'
miRNA:   3'- aUGGa-----CGAUU-CGGCUCUGGA--------AGC---AGG- -5'
22324 3' -53.6 NC_005045.1 + 33621 0.66 0.720614
Target:  5'- gAgCUGCUGcGCCGGGACCgggagUGgacugCCu -3'
miRNA:   3'- aUgGACGAUuCGGCUCUGGaa---GCa----GG- -5'
22324 3' -53.6 NC_005045.1 + 2988 0.66 0.70952
Target:  5'- gUAUC-GCUGAGCCGuGAUCU-CGacUCCg -3'
miRNA:   3'- -AUGGaCGAUUCGGCuCUGGAaGC--AGG- -5'
22324 3' -53.6 NC_005045.1 + 23122 0.66 0.698344
Target:  5'- -uCCUGCgcGGCCuGGGCCUgcgCGgCCu -3'
miRNA:   3'- auGGACGauUCGGcUCUGGAa--GCaGG- -5'
22324 3' -53.6 NC_005045.1 + 4202 0.66 0.698344
Target:  5'- cUACgUGCagUAGGCCGGGGCCUacUGaCCg -3'
miRNA:   3'- -AUGgACG--AUUCGGCUCUGGAa-GCaGG- -5'
22324 3' -53.6 NC_005045.1 + 33129 0.68 0.61886
Target:  5'- aGCCUGCUGGGCCu---CCg--GUCCg -3'
miRNA:   3'- aUGGACGAUUCGGcucuGGaagCAGG- -5'
22324 3' -53.6 NC_005045.1 + 8987 0.68 0.605189
Target:  5'- gACCUGCUcggccuGGGCCaGGGACCccccguggaaGUCCu -3'
miRNA:   3'- aUGGACGA------UUCGG-CUCUGGaag-------CAGG- -5'
22324 3' -53.6 NC_005045.1 + 29535 0.68 0.594959
Target:  5'- gGCCUcuuccagGCUGAgcuGCCGGGACagUUCGUCg -3'
miRNA:   3'- aUGGA-------CGAUU---CGGCUCUGg-AAGCAGg -5'
22324 3' -53.6 NC_005045.1 + 25971 0.68 0.581362
Target:  5'- cACCUGCUgcAuaccgaccagcccuGGCCGAGGCCgUUCcUCUa -3'
miRNA:   3'- aUGGACGA--U--------------UCGGCUCUGG-AAGcAGG- -5'
22324 3' -53.6 NC_005045.1 + 16644 0.69 0.562216
Target:  5'- cACUgGCUGGGCCGcaAGGCCgcugaggUgGUCCg -3'
miRNA:   3'- aUGGaCGAUUCGGC--UCUGGa------AgCAGG- -5'
22324 3' -53.6 NC_005045.1 + 25755 0.69 0.551032
Target:  5'- cGCCUGCaauuccuGGgCGAuGACCUgggcggucUCGUCCg -3'
miRNA:   3'- aUGGACGau-----UCgGCU-CUGGA--------AGCAGG- -5'
22324 3' -53.6 NC_005045.1 + 6979 0.69 0.54769
Target:  5'- cUGCCUGCUGuGCCGgucgucaacgcacaGGGCCUUCa--- -3'
miRNA:   3'- -AUGGACGAUuCGGC--------------UCUGGAAGcagg -5'
22324 3' -53.6 NC_005045.1 + 5271 0.69 0.539917
Target:  5'- gACCUGUUGAGCCGAcGGCUccaGgCCg -3'
miRNA:   3'- aUGGACGAUUCGGCU-CUGGaagCaGG- -5'
22324 3' -53.6 NC_005045.1 + 15340 0.69 0.528879
Target:  5'- cACCUGCU--GCCGugagguGGACCcgUGUCCc -3'
miRNA:   3'- aUGGACGAuuCGGC------UCUGGaaGCAGG- -5'
22324 3' -53.6 NC_005045.1 + 6185 0.69 0.517926
Target:  5'- aGCUUGCUgauGAGCCGAcagacGGCCUcggUCGgggCCa -3'
miRNA:   3'- aUGGACGA---UUCGGCU-----CUGGA---AGCa--GG- -5'
22324 3' -53.6 NC_005045.1 + 36675 0.7 0.496299
Target:  5'- -uCCcGCUGGGCUGAGGCUgggUCccuGUCCa -3'
miRNA:   3'- auGGaCGAUUCGGCUCUGGa--AG---CAGG- -5'
22324 3' -53.6 NC_005045.1 + 8470 0.7 0.496299
Target:  5'- cGCCgGCUGAGCgaCGAGGCCcugCG-CCg -3'
miRNA:   3'- aUGGaCGAUUCG--GCUCUGGaa-GCaGG- -5'
22324 3' -53.6 NC_005045.1 + 6283 0.7 0.494159
Target:  5'- cUGCCUGCcagguguccuuAGCCGccGCCUUCGcCCg -3'
miRNA:   3'- -AUGGACGau---------UCGGCucUGGAAGCaGG- -5'
22324 3' -53.6 NC_005045.1 + 39439 0.7 0.485639
Target:  5'- gUACUgaaGCUGgaAGCCcucGGGGCCUUgGUCCa -3'
miRNA:   3'- -AUGGa--CGAU--UCGG---CUCUGGAAgCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.