miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22324 5' -55.3 NC_005045.1 + 16950 0.66 0.617107
Target:  5'- -aGGUGcaGGUCGUCcAGCgGGGCGCCc -3'
miRNA:   3'- ggUCAC--CUAGUAGcUCGaCCUGCGGa -5'
22324 5' -55.3 NC_005045.1 + 24490 0.67 0.605941
Target:  5'- ----aGGAagUCGcCGAGCUGGACgGCCa -3'
miRNA:   3'- ggucaCCU--AGUaGCUCGACCUG-CGGa -5'
22324 5' -55.3 NC_005045.1 + 40674 0.67 0.588129
Target:  5'- aCCAGaUGacGAUCAaggacuuccagcgcuUCGAGCgcaucguccUGGACGCCa -3'
miRNA:   3'- -GGUC-AC--CUAGU---------------AGCUCG---------ACCUGCGGa -5'
22324 5' -55.3 NC_005045.1 + 8781 0.67 0.58369
Target:  5'- gCCGGccUGGGUCGaaguaccgcUUGAGCUGcGGCGCa- -3'
miRNA:   3'- -GGUC--ACCUAGU---------AGCUCGAC-CUGCGga -5'
22324 5' -55.3 NC_005045.1 + 31890 0.68 0.536502
Target:  5'- gCCGGUacuguucgccgcaaGGucugCGUCGAGCUGGAgCGCa- -3'
miRNA:   3'- -GGUCA--------------CCua--GUAGCUCGACCU-GCGga -5'
22324 5' -55.3 NC_005045.1 + 37515 0.68 0.496994
Target:  5'- uCCAGuUGGcAUCggCGGGCUGGAuaCGCa- -3'
miRNA:   3'- -GGUC-ACC-UAGuaGCUCGACCU--GCGga -5'
22324 5' -55.3 NC_005045.1 + 3244 0.69 0.465948
Target:  5'- aCCcGUGGaAUCGUCGAgGCUGuGACcaaGCCg -3'
miRNA:   3'- -GGuCACC-UAGUAGCU-CGAC-CUG---CGGa -5'
22324 5' -55.3 NC_005045.1 + 41312 0.71 0.379437
Target:  5'- aUCAGUGGGUguUCGcacagcacAGC-GGGCGCCg -3'
miRNA:   3'- -GGUCACCUAguAGC--------UCGaCCUGCGGa -5'
22324 5' -55.3 NC_005045.1 + 38945 0.71 0.361724
Target:  5'- cCCAGUuca-CGUCGaAGCUGGugGCCg -3'
miRNA:   3'- -GGUCAccuaGUAGC-UCGACCugCGGa -5'
22324 5' -55.3 NC_005045.1 + 15941 1.1 0.000632
Target:  5'- gCCAGUGGAUCAUCGAGCUGGACGCCUa -3'
miRNA:   3'- -GGUCACCUAGUAGCUCGACCUGCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.