Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22325 | 3' | -57.3 | NC_005045.1 | + | 29788 | 0.66 | 0.541226 |
Target: 5'- -gUUGAGGCguacucccGUGgcauGGUCGAGgAGGGCc -3' miRNA: 3'- ggAACUUCGa-------CAC----CCGGCUCgUCCCG- -5' |
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22325 | 3' | -57.3 | NC_005045.1 | + | 41615 | 0.66 | 0.530488 |
Target: 5'- aCCUUGuAGGCgGUgagcGGGUCcGGUGGGGUa -3' miRNA: 3'- -GGAAC-UUCGaCA----CCCGGcUCGUCCCG- -5' |
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22325 | 3' | -57.3 | NC_005045.1 | + | 41838 | 0.66 | 0.51983 |
Target: 5'- aCC---AAGCUGcGGGCUGAGCuGGucGCa -3' miRNA: 3'- -GGaacUUCGACaCCCGGCUCGuCC--CG- -5' |
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22325 | 3' | -57.3 | NC_005045.1 | + | 28143 | 0.66 | 0.509256 |
Target: 5'- gCCUcuggUGGAuagcGCUGUGGuGCCGcugccGGCAcGGGUc -3' miRNA: 3'- -GGA----ACUU----CGACACC-CGGC-----UCGU-CCCG- -5' |
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22325 | 3' | -57.3 | NC_005045.1 | + | 40011 | 0.66 | 0.509255 |
Target: 5'- --gUGgcGCUGcaugaUGGGCC--GCAGGGUg -3' miRNA: 3'- ggaACuuCGAC-----ACCCGGcuCGUCCCG- -5' |
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22325 | 3' | -57.3 | NC_005045.1 | + | 30370 | 0.66 | 0.498773 |
Target: 5'- gCgUUGgcGCUGaacucgcgcaGGGCCuGGGCcGGGGCa -3' miRNA: 3'- -GgAACuuCGACa---------CCCGG-CUCG-UCCCG- -5' |
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22325 | 3' | -57.3 | NC_005045.1 | + | 41978 | 0.67 | 0.488388 |
Target: 5'- -aUUGAGGgugugUGUGGGCUGGGUuggcugguguGGGCg -3' miRNA: 3'- ggAACUUCg----ACACCCGGCUCGu---------CCCG- -5' |
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22325 | 3' | -57.3 | NC_005045.1 | + | 14794 | 0.67 | 0.488388 |
Target: 5'- gCCgggGAAGUUG-GuGGCCGAGCGGa-- -3' miRNA: 3'- -GGaa-CUUCGACaC-CCGGCUCGUCccg -5' |
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22325 | 3' | -57.3 | NC_005045.1 | + | 34495 | 0.67 | 0.488388 |
Target: 5'- gCCgcUGGcccGCUGUgcaacgGGGCCGAGCuGGuGCu -3' miRNA: 3'- -GGa-ACUu--CGACA------CCCGGCUCGuCC-CG- -5' |
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22325 | 3' | -57.3 | NC_005045.1 | + | 28645 | 0.67 | 0.467931 |
Target: 5'- aCCUgGAcaaucAGaUGUGGaaccucGCCGAGCAGGcGCa -3' miRNA: 3'- -GGAaCU-----UCgACACC------CGGCUCGUCC-CG- -5' |
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22325 | 3' | -57.3 | NC_005045.1 | + | 34811 | 0.67 | 0.457869 |
Target: 5'- aCCUUGAacaAGgUGgcgcGGGCgGcGCAGGGg -3' miRNA: 3'- -GGAACU---UCgACa---CCCGgCuCGUCCCg -5' |
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22325 | 3' | -57.3 | NC_005045.1 | + | 17648 | 0.68 | 0.418828 |
Target: 5'- --aUGAuGCaGUGGGCCGccgaGGUcaAGGGCu -3' miRNA: 3'- ggaACUuCGaCACCCGGC----UCG--UCCCG- -5' |
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22325 | 3' | -57.3 | NC_005045.1 | + | 33519 | 0.68 | 0.409388 |
Target: 5'- gCCa--AGGCgau-GGCUGAGCAGGGCg -3' miRNA: 3'- -GGaacUUCGacacCCGGCUCGUCCCG- -5' |
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22325 | 3' | -57.3 | NC_005045.1 | + | 23482 | 0.68 | 0.409387 |
Target: 5'- gCCggcGGAGCUaccgGGGCCGgcugAGCGGGuGCu -3' miRNA: 3'- -GGaa-CUUCGAca--CCCGGC----UCGUCC-CG- -5' |
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22325 | 3' | -57.3 | NC_005045.1 | + | 34495 | 0.69 | 0.372985 |
Target: 5'- gCUUGcuGAGCUGgccacgauGGCCcaccGGCAGGGCg -3' miRNA: 3'- gGAAC--UUCGACac------CCGGc---UCGUCCCG- -5' |
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22325 | 3' | -57.3 | NC_005045.1 | + | 30216 | 0.7 | 0.325839 |
Target: 5'- --gUGAuGCUaucagguaucccgGaGGCCGAGCAGGGCg -3' miRNA: 3'- ggaACUuCGAca-----------C-CCGGCUCGUCCCG- -5' |
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22325 | 3' | -57.3 | NC_005045.1 | + | 34356 | 0.71 | 0.256961 |
Target: 5'- ---aGGAGCUGacgGGGCaacuGCGGGGCg -3' miRNA: 3'- ggaaCUUCGACa--CCCGgcu-CGUCCCG- -5' |
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22325 | 3' | -57.3 | NC_005045.1 | + | 2661 | 0.71 | 0.250379 |
Target: 5'- gCUUGAAGCUGUaccacGGGCUGuuGguGGcGCc -3' miRNA: 3'- gGAACUUCGACA-----CCCGGCu-CguCC-CG- -5' |
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22325 | 3' | -57.3 | NC_005045.1 | + | 16060 | 1.14 | 0.000179 |
Target: 5'- aCCUUGAAGCUGUGGGCCGAGCAGGGCa -3' miRNA: 3'- -GGAACUUCGACACCCGGCUCGUCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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