miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22325 3' -57.3 NC_005045.1 + 29788 0.66 0.541226
Target:  5'- -gUUGAGGCguacucccGUGgcauGGUCGAGgAGGGCc -3'
miRNA:   3'- ggAACUUCGa-------CAC----CCGGCUCgUCCCG- -5'
22325 3' -57.3 NC_005045.1 + 41615 0.66 0.530488
Target:  5'- aCCUUGuAGGCgGUgagcGGGUCcGGUGGGGUa -3'
miRNA:   3'- -GGAAC-UUCGaCA----CCCGGcUCGUCCCG- -5'
22325 3' -57.3 NC_005045.1 + 41838 0.66 0.51983
Target:  5'- aCC---AAGCUGcGGGCUGAGCuGGucGCa -3'
miRNA:   3'- -GGaacUUCGACaCCCGGCUCGuCC--CG- -5'
22325 3' -57.3 NC_005045.1 + 28143 0.66 0.509256
Target:  5'- gCCUcuggUGGAuagcGCUGUGGuGCCGcugccGGCAcGGGUc -3'
miRNA:   3'- -GGA----ACUU----CGACACC-CGGC-----UCGU-CCCG- -5'
22325 3' -57.3 NC_005045.1 + 40011 0.66 0.509255
Target:  5'- --gUGgcGCUGcaugaUGGGCC--GCAGGGUg -3'
miRNA:   3'- ggaACuuCGAC-----ACCCGGcuCGUCCCG- -5'
22325 3' -57.3 NC_005045.1 + 30370 0.66 0.498773
Target:  5'- gCgUUGgcGCUGaacucgcgcaGGGCCuGGGCcGGGGCa -3'
miRNA:   3'- -GgAACuuCGACa---------CCCGG-CUCG-UCCCG- -5'
22325 3' -57.3 NC_005045.1 + 41978 0.67 0.488388
Target:  5'- -aUUGAGGgugugUGUGGGCUGGGUuggcugguguGGGCg -3'
miRNA:   3'- ggAACUUCg----ACACCCGGCUCGu---------CCCG- -5'
22325 3' -57.3 NC_005045.1 + 14794 0.67 0.488388
Target:  5'- gCCgggGAAGUUG-GuGGCCGAGCGGa-- -3'
miRNA:   3'- -GGaa-CUUCGACaC-CCGGCUCGUCccg -5'
22325 3' -57.3 NC_005045.1 + 34495 0.67 0.488388
Target:  5'- gCCgcUGGcccGCUGUgcaacgGGGCCGAGCuGGuGCu -3'
miRNA:   3'- -GGa-ACUu--CGACA------CCCGGCUCGuCC-CG- -5'
22325 3' -57.3 NC_005045.1 + 28645 0.67 0.467931
Target:  5'- aCCUgGAcaaucAGaUGUGGaaccucGCCGAGCAGGcGCa -3'
miRNA:   3'- -GGAaCU-----UCgACACC------CGGCUCGUCC-CG- -5'
22325 3' -57.3 NC_005045.1 + 34811 0.67 0.457869
Target:  5'- aCCUUGAacaAGgUGgcgcGGGCgGcGCAGGGg -3'
miRNA:   3'- -GGAACU---UCgACa---CCCGgCuCGUCCCg -5'
22325 3' -57.3 NC_005045.1 + 17648 0.68 0.418828
Target:  5'- --aUGAuGCaGUGGGCCGccgaGGUcaAGGGCu -3'
miRNA:   3'- ggaACUuCGaCACCCGGC----UCG--UCCCG- -5'
22325 3' -57.3 NC_005045.1 + 33519 0.68 0.409388
Target:  5'- gCCa--AGGCgau-GGCUGAGCAGGGCg -3'
miRNA:   3'- -GGaacUUCGacacCCGGCUCGUCCCG- -5'
22325 3' -57.3 NC_005045.1 + 23482 0.68 0.409387
Target:  5'- gCCggcGGAGCUaccgGGGCCGgcugAGCGGGuGCu -3'
miRNA:   3'- -GGaa-CUUCGAca--CCCGGC----UCGUCC-CG- -5'
22325 3' -57.3 NC_005045.1 + 34495 0.69 0.372985
Target:  5'- gCUUGcuGAGCUGgccacgauGGCCcaccGGCAGGGCg -3'
miRNA:   3'- gGAAC--UUCGACac------CCGGc---UCGUCCCG- -5'
22325 3' -57.3 NC_005045.1 + 30216 0.7 0.325839
Target:  5'- --gUGAuGCUaucagguaucccgGaGGCCGAGCAGGGCg -3'
miRNA:   3'- ggaACUuCGAca-----------C-CCGGCUCGUCCCG- -5'
22325 3' -57.3 NC_005045.1 + 34356 0.71 0.256961
Target:  5'- ---aGGAGCUGacgGGGCaacuGCGGGGCg -3'
miRNA:   3'- ggaaCUUCGACa--CCCGgcu-CGUCCCG- -5'
22325 3' -57.3 NC_005045.1 + 2661 0.71 0.250379
Target:  5'- gCUUGAAGCUGUaccacGGGCUGuuGguGGcGCc -3'
miRNA:   3'- gGAACUUCGACA-----CCCGGCu-CguCC-CG- -5'
22325 3' -57.3 NC_005045.1 + 16060 1.14 0.000179
Target:  5'- aCCUUGAAGCUGUGGGCCGAGCAGGGCa -3'
miRNA:   3'- -GGAACUUCGACACCCGGCUCGUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.