miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22325 5' -57.4 NC_005045.1 + 33913 0.66 0.515194
Target:  5'- -gGCUCgGCgGGCcAGCCCAggGGCGg -3'
miRNA:   3'- ggCGAGaCG-CCGuUCGGGUagCUGUa -5'
22325 5' -57.4 NC_005045.1 + 15375 0.66 0.503546
Target:  5'- cCUGCUggaaccgCUGCGGCGGGCCg--UGGCGg -3'
miRNA:   3'- -GGCGA-------GACGCCGUUCGGguaGCUGUa -5'
22325 5' -57.4 NC_005045.1 + 23080 0.66 0.494102
Target:  5'- uCCGcCUCUGCcuGU-AGCUCGUCGGCGc -3'
miRNA:   3'- -GGC-GAGACGc-CGuUCGGGUAGCUGUa -5'
22325 5' -57.4 NC_005045.1 + 32421 0.66 0.473412
Target:  5'- gCCGCg-UGCGGC-GGCCUccUCGGCGg -3'
miRNA:   3'- -GGCGagACGCCGuUCGGGu-AGCUGUa -5'
22325 5' -57.4 NC_005045.1 + 32105 0.67 0.443223
Target:  5'- gUGCUCUGCGGCucGgUCGUgcUGGCAUg -3'
miRNA:   3'- gGCGAGACGCCGuuCgGGUA--GCUGUA- -5'
22325 5' -57.4 NC_005045.1 + 31892 0.67 0.433403
Target:  5'- gCGCUCcagGCGGCAGGUauCCAgcCGACu- -3'
miRNA:   3'- gGCGAGa--CGCCGUUCG--GGUa-GCUGua -5'
22325 5' -57.4 NC_005045.1 + 148 0.69 0.34266
Target:  5'- cCUGCg--GUGGCGuggcuGCCCAUCGGCu- -3'
miRNA:   3'- -GGCGagaCGCCGUu----CGGGUAGCUGua -5'
22325 5' -57.4 NC_005045.1 + 42211 0.69 0.34266
Target:  5'- cCUGCg--GUGGCGuggcuGCCCAUCGGCu- -3'
miRNA:   3'- -GGCGagaCGCCGUu----CGGGUAGCUGua -5'
22325 5' -57.4 NC_005045.1 + 5348 0.7 0.302708
Target:  5'- gCGCUCgGCGGCcugGAGC-CGUCGGCu- -3'
miRNA:   3'- gGCGAGaCGCCG---UUCGgGUAGCUGua -5'
22325 5' -57.4 NC_005045.1 + 39080 0.7 0.273402
Target:  5'- cCCGCUCggugGCGGUGAGgCCGuucuUCGugGUc -3'
miRNA:   3'- -GGCGAGa---CGCCGUUCgGGU----AGCugUA- -5'
22325 5' -57.4 NC_005045.1 + 15743 0.77 0.098535
Target:  5'- -aGCUCUGCGGCAugaagacGGCCU-UCGACAUc -3'
miRNA:   3'- ggCGAGACGCCGU-------UCGGGuAGCUGUA- -5'
22325 5' -57.4 NC_005045.1 + 16095 1.07 0.000566
Target:  5'- cCCGCUCUGCGGCAAGCCCAUCGACAUc -3'
miRNA:   3'- -GGCGAGACGCCGUUCGGGUAGCUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.