Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22327 | 3' | -53 | NC_005045.1 | + | 17057 | 1.14 | 0.000547 |
Target: 5'- aUCGCCAAGCAGCAGUUCGCGUUCACCa -3' miRNA: 3'- -AGCGGUUCGUCGUCAAGCGCAAGUGG- -5' |
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22327 | 3' | -53 | NC_005045.1 | + | 3270 | 0.74 | 0.316427 |
Target: 5'- aC-CCAGGUAGCGG-UCGCuguaGUUCACCa -3' miRNA: 3'- aGcGGUUCGUCGUCaAGCG----CAAGUGG- -5' |
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22327 | 3' | -53 | NC_005045.1 | + | 3761 | 0.74 | 0.332867 |
Target: 5'- aCGUCAAGCcGCacAGUUCGCGgugccCGCCg -3' miRNA: 3'- aGCGGUUCGuCG--UCAAGCGCaa---GUGG- -5' |
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22327 | 3' | -53 | NC_005045.1 | + | 21648 | 0.73 | 0.376659 |
Target: 5'- gCGUgGAGCAGCGGgcuaUCGaGUUCGCUa -3' miRNA: 3'- aGCGgUUCGUCGUCa---AGCgCAAGUGG- -5' |
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22327 | 3' | -53 | NC_005045.1 | + | 31201 | 0.72 | 0.404736 |
Target: 5'- -aGCCGcGCAGUGGUUCGCcgaGgaCACCg -3' miRNA: 3'- agCGGUuCGUCGUCAAGCG---CaaGUGG- -5' |
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22327 | 3' | -53 | NC_005045.1 | + | 32872 | 0.71 | 0.454343 |
Target: 5'- aCGCCGacGGUAGCAGcguggaccgcUUCGUGgagcacggUCACCg -3' miRNA: 3'- aGCGGU--UCGUCGUC----------AAGCGCa-------AGUGG- -5' |
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22327 | 3' | -53 | NC_005045.1 | + | 21780 | 0.71 | 0.48564 |
Target: 5'- cUGCCAAGCuggcGCGG-UCGCuGUUCcCCa -3' miRNA: 3'- aGCGGUUCGu---CGUCaAGCG-CAAGuGG- -5' |
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22327 | 3' | -53 | NC_005045.1 | + | 4470 | 0.7 | 0.539918 |
Target: 5'- cUGCCAAGguGacCGGUcCGCGUccCACCg -3' miRNA: 3'- aGCGGUUCguC--GUCAaGCGCAa-GUGG- -5' |
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22327 | 3' | -53 | NC_005045.1 | + | 14354 | 0.7 | 0.551033 |
Target: 5'- gUCGuCCGGGCGGC--UUUGCGggUUACCg -3' miRNA: 3'- -AGC-GGUUCGUCGucAAGCGCa-AGUGG- -5' |
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22327 | 3' | -53 | NC_005045.1 | + | 38797 | 0.7 | 0.551033 |
Target: 5'- -gGCgCGGGUAGCcgGGUUCuGCGUgaugCACCa -3' miRNA: 3'- agCG-GUUCGUCG--UCAAG-CGCAa---GUGG- -5' |
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22327 | 3' | -53 | NC_005045.1 | + | 26861 | 0.69 | 0.607466 |
Target: 5'- cUGCCcAGCGGCGGUUaGCGgaaUC-CCa -3' miRNA: 3'- aGCGGuUCGUCGUCAAgCGCa--AGuGG- -5' |
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22327 | 3' | -53 | NC_005045.1 | + | 35499 | 0.69 | 0.607466 |
Target: 5'- aUCGCCGguGGCGGCug--CGgGgucgUCGCCg -3' miRNA: 3'- -AGCGGU--UCGUCGucaaGCgCa---AGUGG- -5' |
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22327 | 3' | -53 | NC_005045.1 | + | 24868 | 0.69 | 0.607466 |
Target: 5'- gCGUCAAGguGCuGgagacucCGCGcUUCGCCa -3' miRNA: 3'- aGCGGUUCguCGuCaa-----GCGC-AAGUGG- -5' |
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22327 | 3' | -53 | NC_005045.1 | + | 39024 | 0.69 | 0.612022 |
Target: 5'- cCGCCAccgAGCgggcgaagcugacacGGCAG-UCGCaggaGUUCACCu -3' miRNA: 3'- aGCGGU---UCG---------------UCGUCaAGCG----CAAGUGG- -5' |
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22327 | 3' | -53 | NC_005045.1 | + | 1290 | 0.68 | 0.653074 |
Target: 5'- -aGCCAucuGGCGGUagaGGUUCGaagcUUCACCa -3' miRNA: 3'- agCGGU---UCGUCG---UCAAGCgc--AAGUGG- -5' |
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22327 | 3' | -53 | NC_005045.1 | + | 11001 | 0.67 | 0.675798 |
Target: 5'- cUGCCAgcaGGCAGCGGaUCauGCGUUCuuCu -3' miRNA: 3'- aGCGGU---UCGUCGUCaAG--CGCAAGugG- -5' |
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22327 | 3' | -53 | NC_005045.1 | + | 34895 | 0.67 | 0.687099 |
Target: 5'- aCGCCAguauuGGC-GCgGGUUCGCGguuaugUCACa -3' miRNA: 3'- aGCGGU-----UCGuCG-UCAAGCGCa-----AGUGg -5' |
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22327 | 3' | -53 | NC_005045.1 | + | 35213 | 0.67 | 0.687099 |
Target: 5'- aCGCCAAGCAcGCcggAGUucUCGUagGUUCcCCg -3' miRNA: 3'- aGCGGUUCGU-CG---UCA--AGCG--CAAGuGG- -5' |
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22327 | 3' | -53 | NC_005045.1 | + | 36270 | 0.67 | 0.70952 |
Target: 5'- cUCGCCAuagAGCuGCAuggUgGUGUUCugCa -3' miRNA: 3'- -AGCGGU---UCGuCGUca-AgCGCAAGugG- -5' |
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22327 | 3' | -53 | NC_005045.1 | + | 17527 | 0.67 | 0.70952 |
Target: 5'- gUUGCUcAGCAGgGcUUUGCGUUgCGCCg -3' miRNA: 3'- -AGCGGuUCGUCgUcAAGCGCAA-GUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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