miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22328 3' -60.1 NC_005045.1 + 27422 0.66 0.397862
Target:  5'- aGCUA-CAUgccGgGGcCGGCUgaguacauccagGCGGCGGCc -3'
miRNA:   3'- -UGAUaGUGa--CgCC-GCCGA------------CGCCGCCG- -5'
22328 3' -60.1 NC_005045.1 + 2132 0.66 0.370367
Target:  5'- cUUGUCGCgGCgagccuuGGCGGCuuUGCGuugacGCGGCg -3'
miRNA:   3'- uGAUAGUGaCG-------CCGCCG--ACGC-----CGCCG- -5'
22328 3' -60.1 NC_005045.1 + 14116 0.67 0.329625
Target:  5'- ----cCACcgGCGGUGGCgGCGGUcGCa -3'
miRNA:   3'- ugauaGUGa-CGCCGCCGaCGCCGcCG- -5'
22328 3' -60.1 NC_005045.1 + 16215 0.67 0.329625
Target:  5'- --gAUCACgaaUGCGGCGGguucCUGgGGCuGCa -3'
miRNA:   3'- ugaUAGUG---ACGCCGCC----GACgCCGcCG- -5'
22328 3' -60.1 NC_005045.1 + 25624 0.67 0.321728
Target:  5'- --cGUCAUUGCGcaccaGGCUGCGcucGCGGUa -3'
miRNA:   3'- ugaUAGUGACGCcg---CCGACGC---CGCCG- -5'
22328 3' -60.1 NC_005045.1 + 7866 0.68 0.284373
Target:  5'- uGCUGUCGguCUGaaCGGUacaaGGCUGCgcgacaggcuGGCGGCg -3'
miRNA:   3'- -UGAUAGU--GAC--GCCG----CCGACG----------CCGCCG- -5'
22328 3' -60.1 NC_005045.1 + 20907 0.68 0.284373
Target:  5'- ----cCACUGCGaUGGCgucuCGGCGGCg -3'
miRNA:   3'- ugauaGUGACGCcGCCGac--GCCGCCG- -5'
22328 3' -60.1 NC_005045.1 + 30742 0.69 0.257023
Target:  5'- --gAUCA--GUGGCGcGCUgucGCGGCGGCu -3'
miRNA:   3'- ugaUAGUgaCGCCGC-CGA---CGCCGCCG- -5'
22328 3' -60.1 NC_005045.1 + 32420 0.69 0.25053
Target:  5'- ----cCGCgUGCGGCGGCcuccuCGGCGGUc -3'
miRNA:   3'- ugauaGUG-ACGCCGCCGac---GCCGCCG- -5'
22328 3' -60.1 NC_005045.1 + 32114 0.69 0.231863
Target:  5'- gGCUcgGUCguGCUGgcaUGGCuGCUGCuGGCGGCg -3'
miRNA:   3'- -UGA--UAG--UGAC---GCCGcCGACG-CCGCCG- -5'
22328 3' -60.1 NC_005045.1 + 140 0.69 0.225906
Target:  5'- -gUGUCAaccCUGCGGUGGC-GUGGCuGCc -3'
miRNA:   3'- ugAUAGU---GACGCCGCCGaCGCCGcCG- -5'
22328 3' -60.1 NC_005045.1 + 42203 0.69 0.225906
Target:  5'- -gUGUCAaccCUGCGGUGGC-GUGGCuGCc -3'
miRNA:   3'- ugAUAGU---GACGCCGCCGaCGCCGcCG- -5'
22328 3' -60.1 NC_005045.1 + 22684 0.7 0.198043
Target:  5'- cGC-AUCACUGCGGaagaGGCagagaacacgcUG-GGCGGCa -3'
miRNA:   3'- -UGaUAGUGACGCCg---CCG-----------ACgCCGCCG- -5'
22328 3' -60.1 NC_005045.1 + 41497 0.71 0.177956
Target:  5'- cGCUGUgaucgcagcagcCACUGCccugGGCGGCgagGGCGGCg -3'
miRNA:   3'- -UGAUA------------GUGACG----CCGCCGacgCCGCCG- -5'
22328 3' -60.1 NC_005045.1 + 2522 0.76 0.077195
Target:  5'- aGCg--CAUUGCGGCGGCUGCcauuaGGCauGGCu -3'
miRNA:   3'- -UGauaGUGACGCCGCCGACG-----CCG--CCG- -5'
22328 3' -60.1 NC_005045.1 + 15377 0.77 0.061372
Target:  5'- uGCUGgaacCGCUGCGGCgGGCcGUGGCGGa -3'
miRNA:   3'- -UGAUa---GUGACGCCG-CCGaCGCCGCCg -5'
22328 3' -60.1 NC_005045.1 + 35501 0.79 0.047315
Target:  5'- -aUAUCGCcgGUGGCGGCUGCGG-GGUc -3'
miRNA:   3'- ugAUAGUGa-CGCCGCCGACGCCgCCG- -5'
22328 3' -60.1 NC_005045.1 + 17399 1.1 0.000176
Target:  5'- cACUAUCACUGCGGCGGCUGCGGCGGCu -3'
miRNA:   3'- -UGAUAGUGACGCCGCCGACGCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.