miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22329 3' -58.1 NC_005045.1 + 17978 0.66 0.512817
Target:  5'- cAGGGUGGCgGCGcGGUAUuCGCGCCa-- -3'
miRNA:   3'- cUCUCACCG-CGC-UUAUG-GCGCGGcgg -5'
22329 3' -58.1 NC_005045.1 + 6936 0.66 0.492072
Target:  5'- cAGGGUaucGGCGCuGAAcugguaCGgGCCGCCg -3'
miRNA:   3'- cUCUCA---CCGCG-CUUaug---GCgCGGCGG- -5'
22329 3' -58.1 NC_005045.1 + 8760 0.67 0.432364
Target:  5'- cGAGGGUaagGGacgGCGGAUcaaGCCGCGCCuguacucggcgGCCc -3'
miRNA:   3'- -CUCUCA---CCg--CGCUUA---UGGCGCGG-----------CGG- -5'
22329 3' -58.1 NC_005045.1 + 14854 0.68 0.394988
Target:  5'- cGGAuGcUGGCGCGAcUGCCGCcCCuGCUg -3'
miRNA:   3'- cUCU-C-ACCGCGCUuAUGGCGcGG-CGG- -5'
22329 3' -58.1 NC_005045.1 + 13530 0.68 0.394988
Target:  5'- aAGGGcGuGCGCGAcaucaugGCCGaCGCUGCCc -3'
miRNA:   3'- cUCUCaC-CGCGCUua-----UGGC-GCGGCGG- -5'
22329 3' -58.1 NC_005045.1 + 18689 0.68 0.377099
Target:  5'- uGGGGcGGCccuggccggaGCGuGAUGCUgGCGCCGCCg -3'
miRNA:   3'- cUCUCaCCG----------CGC-UUAUGG-CGCGGCGG- -5'
22329 3' -58.1 NC_005045.1 + 3732 0.68 0.374463
Target:  5'- aGGGGUGGUGaUGAAUACCcGCacuguauacgucaaGCCGCa -3'
miRNA:   3'- cUCUCACCGC-GCUUAUGG-CG--------------CGGCGg -5'
22329 3' -58.1 NC_005045.1 + 32908 0.69 0.334823
Target:  5'- cGGGGUaacGUGCucaacgcccuGAAgaagACCGCGCCGCCg -3'
miRNA:   3'- cUCUCAc--CGCG----------CUUa---UGGCGCGGCGG- -5'
22329 3' -58.1 NC_005045.1 + 6304 0.69 0.326794
Target:  5'- cGAuGGUGGCuGCGAAgguUGCUGC-CUGCCa -3'
miRNA:   3'- -CUcUCACCG-CGCUU---AUGGCGcGGCGG- -5'
22329 3' -58.1 NC_005045.1 + 22527 0.69 0.31891
Target:  5'- --aGGUGGCGCGGAaGCCGU-CCGUg -3'
miRNA:   3'- cucUCACCGCGCUUaUGGCGcGGCGg -5'
22329 3' -58.1 NC_005045.1 + 18890 0.69 0.31891
Target:  5'- --aGGUGGCG-GA--GCUGCGCCuGCCg -3'
miRNA:   3'- cucUCACCGCgCUuaUGGCGCGG-CGG- -5'
22329 3' -58.1 NC_005045.1 + 18674 0.71 0.254375
Target:  5'- --aGGUGGaCGCucGUGCCGCcCCGCCc -3'
miRNA:   3'- cucUCACC-GCGcuUAUGGCGcGGCGG- -5'
22329 3' -58.1 NC_005045.1 + 1216 0.74 0.166414
Target:  5'- --cAGUGGUGCGAacuGUACCGCG-UGCCc -3'
miRNA:   3'- cucUCACCGCGCU---UAUGGCGCgGCGG- -5'
22329 3' -58.1 NC_005045.1 + 10389 0.77 0.092636
Target:  5'- -uGGGUGGCGuCGAAUACCGCGaaGUg -3'
miRNA:   3'- cuCUCACCGC-GCUUAUGGCGCggCGg -5'
22329 3' -58.1 NC_005045.1 + 20815 0.79 0.067596
Target:  5'- cGAGAcGUGGUGCGAGcaguCCGCuugcGCCGCCg -3'
miRNA:   3'- -CUCU-CACCGCGCUUau--GGCG----CGGCGG- -5'
22329 3' -58.1 NC_005045.1 + 17905 1.12 0.000247
Target:  5'- gGAGAGUGGCGCGAAUACCGCGCCGCCa -3'
miRNA:   3'- -CUCUCACCGCGCUUAUGGCGCGGCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.