Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22329 | 3' | -58.1 | NC_005045.1 | + | 32908 | 0.69 | 0.334823 |
Target: 5'- cGGGGUaacGUGCucaacgcccuGAAgaagACCGCGCCGCCg -3' miRNA: 3'- cUCUCAc--CGCG----------CUUa---UGGCGCGGCGG- -5' |
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22329 | 3' | -58.1 | NC_005045.1 | + | 22527 | 0.69 | 0.31891 |
Target: 5'- --aGGUGGCGCGGAaGCCGU-CCGUg -3' miRNA: 3'- cucUCACCGCGCUUaUGGCGcGGCGg -5' |
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22329 | 3' | -58.1 | NC_005045.1 | + | 20815 | 0.79 | 0.067596 |
Target: 5'- cGAGAcGUGGUGCGAGcaguCCGCuugcGCCGCCg -3' miRNA: 3'- -CUCU-CACCGCGCUUau--GGCG----CGGCGG- -5' |
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22329 | 3' | -58.1 | NC_005045.1 | + | 18890 | 0.69 | 0.31891 |
Target: 5'- --aGGUGGCG-GA--GCUGCGCCuGCCg -3' miRNA: 3'- cucUCACCGCgCUuaUGGCGCGG-CGG- -5' |
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22329 | 3' | -58.1 | NC_005045.1 | + | 18689 | 0.68 | 0.377099 |
Target: 5'- uGGGGcGGCccuggccggaGCGuGAUGCUgGCGCCGCCg -3' miRNA: 3'- cUCUCaCCG----------CGC-UUAUGG-CGCGGCGG- -5' |
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22329 | 3' | -58.1 | NC_005045.1 | + | 18674 | 0.71 | 0.254375 |
Target: 5'- --aGGUGGaCGCucGUGCCGCcCCGCCc -3' miRNA: 3'- cucUCACC-GCGcuUAUGGCGcGGCGG- -5' |
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22329 | 3' | -58.1 | NC_005045.1 | + | 17978 | 0.66 | 0.512817 |
Target: 5'- cAGGGUGGCgGCGcGGUAUuCGCGCCa-- -3' miRNA: 3'- cUCUCACCG-CGC-UUAUG-GCGCGGcgg -5' |
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22329 | 3' | -58.1 | NC_005045.1 | + | 17905 | 1.12 | 0.000247 |
Target: 5'- gGAGAGUGGCGCGAAUACCGCGCCGCCa -3' miRNA: 3'- -CUCUCACCGCGCUUAUGGCGCGGCGG- -5' |
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22329 | 3' | -58.1 | NC_005045.1 | + | 14854 | 0.68 | 0.394988 |
Target: 5'- cGGAuGcUGGCGCGAcUGCCGCcCCuGCUg -3' miRNA: 3'- cUCU-C-ACCGCGCUuAUGGCGcGG-CGG- -5' |
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22329 | 3' | -58.1 | NC_005045.1 | + | 13530 | 0.68 | 0.394988 |
Target: 5'- aAGGGcGuGCGCGAcaucaugGCCGaCGCUGCCc -3' miRNA: 3'- cUCUCaC-CGCGCUua-----UGGC-GCGGCGG- -5' |
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22329 | 3' | -58.1 | NC_005045.1 | + | 10389 | 0.77 | 0.092636 |
Target: 5'- -uGGGUGGCGuCGAAUACCGCGaaGUg -3' miRNA: 3'- cuCUCACCGC-GCUUAUGGCGCggCGg -5' |
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22329 | 3' | -58.1 | NC_005045.1 | + | 8760 | 0.67 | 0.432364 |
Target: 5'- cGAGGGUaagGGacgGCGGAUcaaGCCGCGCCuguacucggcgGCCc -3' miRNA: 3'- -CUCUCA---CCg--CGCUUA---UGGCGCGG-----------CGG- -5' |
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22329 | 3' | -58.1 | NC_005045.1 | + | 6936 | 0.66 | 0.492072 |
Target: 5'- cAGGGUaucGGCGCuGAAcugguaCGgGCCGCCg -3' miRNA: 3'- cUCUCA---CCGCG-CUUaug---GCgCGGCGG- -5' |
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22329 | 3' | -58.1 | NC_005045.1 | + | 6304 | 0.69 | 0.326794 |
Target: 5'- cGAuGGUGGCuGCGAAgguUGCUGC-CUGCCa -3' miRNA: 3'- -CUcUCACCG-CGCUU---AUGGCGcGGCGG- -5' |
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22329 | 3' | -58.1 | NC_005045.1 | + | 3732 | 0.68 | 0.374463 |
Target: 5'- aGGGGUGGUGaUGAAUACCcGCacuguauacgucaaGCCGCa -3' miRNA: 3'- cUCUCACCGC-GCUUAUGG-CG--------------CGGCGg -5' |
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22329 | 3' | -58.1 | NC_005045.1 | + | 1216 | 0.74 | 0.166414 |
Target: 5'- --cAGUGGUGCGAacuGUACCGCG-UGCCc -3' miRNA: 3'- cucUCACCGCGCU---UAUGGCGCgGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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