miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22329 5' -57.8 NC_005045.1 + 17820 0.66 0.494017
Target:  5'- -uGGCcgccgccgaGGUgGCCCUGaCCGAGGAGGc -3'
miRNA:   3'- guCCG---------CCAgUGGGACcGGCUUCUUCu -5'
22329 5' -57.8 NC_005045.1 + 22715 0.66 0.492981
Target:  5'- uGGGCGGcacauacUCGCuCUUGGCCG-AGAAc- -3'
miRNA:   3'- gUCCGCC-------AGUG-GGACCGGCuUCUUcu -5'
22329 5' -57.8 NC_005045.1 + 40329 0.66 0.4837
Target:  5'- gAGGCGGgcaaaggCACCCUcGCCGucaccggcguGggGAu -3'
miRNA:   3'- gUCCGCCa------GUGGGAcCGGCuu--------CuuCU- -5'
22329 5' -57.8 NC_005045.1 + 28586 0.66 0.473488
Target:  5'- --uGCGGUgGCCCUGGauauCGAgcGGGAGGu -3'
miRNA:   3'- gucCGCCAgUGGGACCg---GCU--UCUUCU- -5'
22329 5' -57.8 NC_005045.1 + 40629 0.66 0.461378
Target:  5'- gUAGGCGGUagucucaCugCCUuccagggcgacaaGGCCGgcGAGGGc -3'
miRNA:   3'- -GUCCGCCA-------GugGGA-------------CCGGCuuCUUCU- -5'
22329 5' -57.8 NC_005045.1 + 21172 0.67 0.433776
Target:  5'- --uGCGGUCACgCacgGGCCGAcguGggGAu -3'
miRNA:   3'- gucCGCCAGUGgGa--CCGGCUu--CuuCU- -5'
22329 5' -57.8 NC_005045.1 + 27905 0.67 0.414659
Target:  5'- gGGGCGGUguauguggucggCugUgaguuCUGGUCGAAGggGAg -3'
miRNA:   3'- gUCCGCCA------------GugG-----GACCGGCUUCuuCU- -5'
22329 5' -57.8 NC_005045.1 + 8915 0.68 0.386976
Target:  5'- aCGGGgGGUCccugGCCCaGGCCGAGcAGGu -3'
miRNA:   3'- -GUCCgCCAG----UGGGaCCGGCUUcUUCu -5'
22329 5' -57.8 NC_005045.1 + 37041 0.71 0.254326
Target:  5'- gCAGGUuccuuccaaGGcCAguCCCUGGCCGAGGuAGGAa -3'
miRNA:   3'- -GUCCG---------CCaGU--GGGACCGGCUUC-UUCU- -5'
22329 5' -57.8 NC_005045.1 + 5197 0.71 0.254326
Target:  5'- -cGGCGGUUACCCagGaGCUGGAGGAu- -3'
miRNA:   3'- guCCGCCAGUGGGa-C-CGGCUUCUUcu -5'
22329 5' -57.8 NC_005045.1 + 18690 0.72 0.200581
Target:  5'- gGGGCGG---CCCUGGCCGGAGcguGAu -3'
miRNA:   3'- gUCCGCCaguGGGACCGGCUUCuu-CU- -5'
22329 5' -57.8 NC_005045.1 + 9473 0.75 0.136649
Target:  5'- aGGGC-GUCGCCCUGGCCGGu--GGGu -3'
miRNA:   3'- gUCCGcCAGUGGGACCGGCUucuUCU- -5'
22329 5' -57.8 NC_005045.1 + 17940 1.01 0.001473
Target:  5'- aCAGGCGGUCACCCUGGCCGAAGAAa- -3'
miRNA:   3'- -GUCCGCCAGUGGGACCGGCUUCUUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.