miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22330 5' -52.9 NC_005045.1 + 18675 0.66 0.804194
Target:  5'- cGGcgGCaaugACCUGgggCGgcccUGGCCGGAGCGu -3'
miRNA:   3'- -CCuaCGa---UGGGUa--GC----ACUGGCUUCGC- -5'
22330 5' -52.9 NC_005045.1 + 32198 0.66 0.804194
Target:  5'- uGGAUGCcggaACCuaCAUCGUGGCgGguGCu -3'
miRNA:   3'- -CCUACGa---UGG--GUAGCACUGgCuuCGc -5'
22330 5' -52.9 NC_005045.1 + 35434 0.66 0.773938
Target:  5'- uGGAgUGCUccgccaGCCCGaa--GACCGggGCGg -3'
miRNA:   3'- -CCU-ACGA------UGGGUagcaCUGGCuuCGC- -5'
22330 5' -52.9 NC_005045.1 + 40704 0.66 0.773938
Target:  5'- cGGugugGCUuugucGCCCAUCuUGACCccAGCGg -3'
miRNA:   3'- -CCua--CGA-----UGGGUAGcACUGGcuUCGC- -5'
22330 5' -52.9 NC_005045.1 + 5227 0.66 0.773938
Target:  5'- uGGAaGCUGCCCuggcCGUGugCcagcAGCGg -3'
miRNA:   3'- -CCUaCGAUGGGua--GCACugGcu--UCGC- -5'
22330 5' -52.9 NC_005045.1 + 3524 0.66 0.773938
Target:  5'- uGGAaGCcauuuCCuCAUCGUGAaCUGGAGCa -3'
miRNA:   3'- -CCUaCGau---GG-GUAGCACU-GGCUUCGc -5'
22330 5' -52.9 NC_005045.1 + 18492 0.67 0.742292
Target:  5'- cGGUGCUGCCCGaagaggcacgaaUCGaccUGcCCGAcGGCGa -3'
miRNA:   3'- cCUACGAUGGGU------------AGC---ACuGGCU-UCGC- -5'
22330 5' -52.9 NC_005045.1 + 40176 0.68 0.687361
Target:  5'- ---cGCUACCCGcgcUCGUGAa-GAGGCu -3'
miRNA:   3'- ccuaCGAUGGGU---AGCACUggCUUCGc -5'
22330 5' -52.9 NC_005045.1 + 21977 0.68 0.687361
Target:  5'- ---aGCUACUgAUCGUGACUGGuaauGCu -3'
miRNA:   3'- ccuaCGAUGGgUAGCACUGGCUu---CGc -5'
22330 5' -52.9 NC_005045.1 + 27831 0.7 0.552445
Target:  5'- uGGA-GCgUACCCAUCucgGugUGAAGCGc -3'
miRNA:   3'- -CCUaCG-AUGGGUAGca-CugGCUUCGC- -5'
22330 5' -52.9 NC_005045.1 + 28518 0.72 0.426442
Target:  5'- gGGAUGCUAgCCggCGgaagcGCCGAGGCu -3'
miRNA:   3'- -CCUACGAUgGGuaGCac---UGGCUUCGc -5'
22330 5' -52.9 NC_005045.1 + 18155 1.12 0.00082
Target:  5'- cGGAUGCUACCCAUCGUGACCGAAGCGa -3'
miRNA:   3'- -CCUACGAUGGGUAGCACUGGCUUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.