miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22331 5' -51.7 NC_005045.1 + 30725 0.66 0.864294
Target:  5'- aCAGCUAUucgggaCCAACGA-CACCGaGACc -3'
miRNA:   3'- aGUUGAUG------GGUUGCUaGUGGCgCUGc -5'
22331 5' -51.7 NC_005045.1 + 28030 0.66 0.855778
Target:  5'- uUCGGCUGgaCCGGCGAguUC-CUGUGGCGc -3'
miRNA:   3'- -AGUUGAUg-GGUUGCU--AGuGGCGCUGC- -5'
22331 5' -51.7 NC_005045.1 + 8225 0.66 0.855778
Target:  5'- ---uCUACCCAGCGcAUCAgaagguagacCCGCaGGCGc -3'
miRNA:   3'- aguuGAUGGGUUGC-UAGU----------GGCG-CUGC- -5'
22331 5' -51.7 NC_005045.1 + 16973 0.66 0.847012
Target:  5'- uUCGACgUGCCCAA-GAUCAauGCG-CGg -3'
miRNA:   3'- -AGUUG-AUGGGUUgCUAGUggCGCuGC- -5'
22331 5' -51.7 NC_005045.1 + 3276 0.66 0.828765
Target:  5'- aUCAGC-ACCCAgguaGCGGUCGCUGUa--- -3'
miRNA:   3'- -AGUUGaUGGGU----UGCUAGUGGCGcugc -5'
22331 5' -51.7 NC_005045.1 + 24975 0.66 0.828765
Target:  5'- -uGACgGCCCAGCGGguggGCUGCGAUu -3'
miRNA:   3'- agUUGaUGGGUUGCUag--UGGCGCUGc -5'
22331 5' -51.7 NC_005045.1 + 25454 0.66 0.828765
Target:  5'- aUCAAcCUGCCCAAgGG-CACCuuGGCa -3'
miRNA:   3'- -AGUU-GAUGGGUUgCUaGUGGcgCUGc -5'
22331 5' -51.7 NC_005045.1 + 14137 0.67 0.819305
Target:  5'- gCAuCUuCCCGGCGggCACCGCcAUGg -3'
miRNA:   3'- aGUuGAuGGGUUGCuaGUGGCGcUGC- -5'
22331 5' -51.7 NC_005045.1 + 18101 0.67 0.819305
Target:  5'- gCGAUUGCCCAAgGGUCcaucgACCGCa--- -3'
miRNA:   3'- aGUUGAUGGGUUgCUAG-----UGGCGcugc -5'
22331 5' -51.7 NC_005045.1 + 33566 0.67 0.799764
Target:  5'- -gAACU-CCCGACGAgcuauggCuguCCGCGACc -3'
miRNA:   3'- agUUGAuGGGUUGCUa------Gu--GGCGCUGc -5'
22331 5' -51.7 NC_005045.1 + 40905 0.67 0.789706
Target:  5'- cCAAggGCCUcgUGAUCGCCGCaACGc -3'
miRNA:   3'- aGUUgaUGGGuuGCUAGUGGCGcUGC- -5'
22331 5' -51.7 NC_005045.1 + 3840 0.67 0.789706
Target:  5'- aCAAUa--CCGGCGggCACCGCGAa- -3'
miRNA:   3'- aGUUGaugGGUUGCuaGUGGCGCUgc -5'
22331 5' -51.7 NC_005045.1 + 18515 0.67 0.779473
Target:  5'- aUCGAcCUGCCCGACGGcgacuaccugCGCCuCGGCa -3'
miRNA:   3'- -AGUU-GAUGGGUUGCUa---------GUGGcGCUGc -5'
22331 5' -51.7 NC_005045.1 + 6188 0.68 0.758529
Target:  5'- gUCAGCUugCUGAUGA--GCCGacaGACGg -3'
miRNA:   3'- -AGUUGAugGGUUGCUagUGGCg--CUGC- -5'
22331 5' -51.7 NC_005045.1 + 38933 0.68 0.758529
Target:  5'- aUCAACUGCaUCGG-GAUCACCGCcGCc -3'
miRNA:   3'- -AGUUGAUG-GGUUgCUAGUGGCGcUGc -5'
22331 5' -51.7 NC_005045.1 + 2056 0.68 0.758529
Target:  5'- gUCAACgcaaaGCcgCCAAgGcUCGCCGCGACa -3'
miRNA:   3'- -AGUUGa----UG--GGUUgCuAGUGGCGCUGc -5'
22331 5' -51.7 NC_005045.1 + 14832 0.68 0.747843
Target:  5'- cCGGCagUGCCCAACG-UCGCgGCGGa- -3'
miRNA:   3'- aGUUG--AUGGGUUGCuAGUGgCGCUgc -5'
22331 5' -51.7 NC_005045.1 + 13495 0.68 0.747843
Target:  5'- cCGACUGCCaCAAgGA-CACCGCcGCc -3'
miRNA:   3'- aGUUGAUGG-GUUgCUaGUGGCGcUGc -5'
22331 5' -51.7 NC_005045.1 + 27800 0.68 0.737031
Target:  5'- gUCAGCU--CCAGC--UCACCaGCGACGg -3'
miRNA:   3'- -AGUUGAugGGUUGcuAGUGG-CGCUGC- -5'
22331 5' -51.7 NC_005045.1 + 24432 0.68 0.726107
Target:  5'- cUCGGCUGCgcuCCAGCucuUCACCGgcaCGACGg -3'
miRNA:   3'- -AGUUGAUG---GGUUGcu-AGUGGC---GCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.