miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22332 5' -52.5 NC_005045.1 + 37958 0.66 0.813914
Target:  5'- uUGGGCcggUGGACUAUaUCAAGACa- -3'
miRNA:   3'- gGCCUGca-ACCUGAUGgAGUUCUGgu -5'
22332 5' -52.5 NC_005045.1 + 32952 0.67 0.788251
Target:  5'- cCCGGACGUucuccagggucugcaUGGcCUgggccACCUUggGACUc -3'
miRNA:   3'- -GGCCUGCA---------------ACCuGA-----UGGAGuuCUGGu -5'
22332 5' -52.5 NC_005045.1 + 14951 0.67 0.773938
Target:  5'- cCCGGugGUaGGuACUGCC---GGGCCc -3'
miRNA:   3'- -GGCCugCAaCC-UGAUGGaguUCUGGu -5'
22332 5' -52.5 NC_005045.1 + 18458 0.67 0.773938
Target:  5'- uCCGGuCGUaauaGGGCUgguugACCUUgAAGGCCAa -3'
miRNA:   3'- -GGCCuGCAa---CCUGA-----UGGAG-UUCUGGU- -5'
22332 5' -52.5 NC_005045.1 + 24608 0.67 0.742292
Target:  5'- gCCGGGCGUgcuggagaaacUGGACcugACCggCcuGACCGc -3'
miRNA:   3'- -GGCCUGCA-----------ACCUGa--UGGa-GuuCUGGU- -5'
22332 5' -52.5 NC_005045.1 + 19345 0.68 0.709587
Target:  5'- cUCGGAUGcgacaaGGugUACUUCGAcGACCGg -3'
miRNA:   3'- -GGCCUGCaa----CCugAUGGAGUU-CUGGU- -5'
22332 5' -52.5 NC_005045.1 + 33233 0.68 0.709587
Target:  5'- cUCGGACGccgccaGGACgcggCUCAGGGCCGu -3'
miRNA:   3'- -GGCCUGCaa----CCUGaug-GAGUUCUGGU- -5'
22332 5' -52.5 NC_005045.1 + 32530 0.68 0.687361
Target:  5'- uCC-GAgGUugUGGAUcACCUCAAGACCc -3'
miRNA:   3'- -GGcCUgCA--ACCUGaUGGAGUUCUGGu -5'
22332 5' -52.5 NC_005045.1 + 33637 0.69 0.663785
Target:  5'- aCCGGGag-UGGACUGCCUaCGguagcguccgcguAGACCc -3'
miRNA:   3'- -GGCCUgcaACCUGAUGGA-GU-------------UCUGGu -5'
22332 5' -52.5 NC_005045.1 + 19832 0.69 0.661531
Target:  5'- -aGGGCGUcguggaccacugccUGGACUACCUCGAcGAg-- -3'
miRNA:   3'- ggCCUGCA--------------ACCUGAUGGAGUU-CUggu -5'
22332 5' -52.5 NC_005045.1 + 24323 0.69 0.619714
Target:  5'- cCUGGAuCGccUGGGCaACgUCGAGGCCAa -3'
miRNA:   3'- -GGCCU-GCa-ACCUGaUGgAGUUCUGGU- -5'
22332 5' -52.5 NC_005045.1 + 14895 0.7 0.597141
Target:  5'- gCCGcGACGUUGGgcACUGCCggCAGGuuGCUAc -3'
miRNA:   3'- -GGC-CUGCAACC--UGAUGGa-GUUC--UGGU- -5'
22332 5' -52.5 NC_005045.1 + 26120 0.73 0.426442
Target:  5'- cCUGG-UGcauGACUACCUCAAGGCCAa -3'
miRNA:   3'- -GGCCuGCaacCUGAUGGAGUUCUGGU- -5'
22332 5' -52.5 NC_005045.1 + 3101 0.76 0.295669
Target:  5'- cCCGGACagcGGACUGCC-CuGGACCAg -3'
miRNA:   3'- -GGCCUGcaaCCUGAUGGaGuUCUGGU- -5'
22332 5' -52.5 NC_005045.1 + 18411 1.12 0.001049
Target:  5'- aCCGGACGUUGGACUACCUCAAGACCAg -3'
miRNA:   3'- -GGCCUGCAACCUGAUGGAGUUCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.