miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22333 5' -61.7 NC_005045.1 + 18658 1.03 0.000341
Target:  5'- gUUCCUCCAGGACCCCUCGGCGGCAAUg -3'
miRNA:   3'- -AAGGAGGUCCUGGGGAGCCGCCGUUA- -5'
22333 5' -61.7 NC_005045.1 + 17892 0.82 0.017318
Target:  5'- cUCCUCgguCAGGGCCaCCUCGGCGGCGGc -3'
miRNA:   3'- aAGGAG---GUCCUGG-GGAGCCGCCGUUa -5'
22333 5' -61.7 NC_005045.1 + 32668 0.78 0.03658
Target:  5'- -cCCUCCAGGgucuugagggugucaGCCaCCUUGGCGGCGAUg -3'
miRNA:   3'- aaGGAGGUCC---------------UGG-GGAGCCGCCGUUA- -5'
22333 5' -61.7 NC_005045.1 + 33751 0.72 0.111165
Target:  5'- gUCggCCAGGGCCUUgauggUCGGCGGCAGg -3'
miRNA:   3'- aAGgaGGUCCUGGGG-----AGCCGCCGUUa -5'
22333 5' -61.7 NC_005045.1 + 17615 0.7 0.146829
Target:  5'- -cCCUCCAgGGACgCCUCGGgagUGGCAu- -3'
miRNA:   3'- aaGGAGGU-CCUGgGGAGCC---GCCGUua -5'
22333 5' -61.7 NC_005045.1 + 8620 0.68 0.197848
Target:  5'- cUCCacgCCGGGGCCUCggugcUGGUGGCAGc -3'
miRNA:   3'- aAGGa--GGUCCUGGGGa----GCCGCCGUUa -5'
22333 5' -61.7 NC_005045.1 + 39620 0.66 0.277383
Target:  5'- aUgUUCguGGACCCUgccggcgaCGGCGGCGAc -3'
miRNA:   3'- aAgGAGguCCUGGGGa-------GCCGCCGUUa -5'
22333 5' -61.7 NC_005045.1 + 14711 0.66 0.283742
Target:  5'- cUUCCUCCAGGAgacgaUCCgCUCGGCcaccaacuuccccGGCu-- -3'
miRNA:   3'- -AAGGAGGUCCU-----GGG-GAGCCG-------------CCGuua -5'
22333 5' -61.7 NC_005045.1 + 16724 0.66 0.299027
Target:  5'- -aCUUCC-GGACCaCCUCaGCGGCc-- -3'
miRNA:   3'- aaGGAGGuCCUGG-GGAGcCGCCGuua -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.