Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22334 | 3' | -54.1 | NC_005045.1 | + | 149 | 0.68 | 0.594844 |
Target: 5'- -cUGCGGUGGCGuGGcugcccaucggcucaUACc-CAGCGCCc -3' miRNA: 3'- ccACGCUACCGC-CU---------------AUGauGUCGCGG- -5' |
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22334 | 3' | -54.1 | NC_005045.1 | + | 2124 | 0.66 | 0.691235 |
Target: 5'- --gGCGAgccuUGGCGGcuuUGCguugacGCGGCGUCa -3' miRNA: 3'- ccaCGCU----ACCGCCu--AUGa-----UGUCGCGG- -5' |
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22334 | 3' | -54.1 | NC_005045.1 | + | 3190 | 0.67 | 0.63527 |
Target: 5'- --cGCGuggGGCuGGUgaACUACAGCGaCCg -3' miRNA: 3'- ccaCGCua-CCGcCUA--UGAUGUCGC-GG- -5' |
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22334 | 3' | -54.1 | NC_005045.1 | + | 4348 | 0.67 | 0.63527 |
Target: 5'- cGGUGaGAUGuauCGGGUAgUGCAGC-CCg -3' miRNA: 3'- -CCACgCUACc--GCCUAUgAUGUCGcGG- -5' |
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22334 | 3' | -54.1 | NC_005045.1 | + | 6205 | 0.66 | 0.717659 |
Target: 5'- cGG-GCGAaGGCGGcgGCUaaggacaccuggcagGCAGCaaccuucgcaGCCa -3' miRNA: 3'- -CCaCGCUaCCGCCuaUGA---------------UGUCG----------CGG- -5' |
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22334 | 3' | -54.1 | NC_005045.1 | + | 10111 | 0.75 | 0.250224 |
Target: 5'- cGGUGCGcAUGGCGuGGUgucccGCaGCGGgCGCCg -3' miRNA: 3'- -CCACGC-UACCGC-CUA-----UGaUGUC-GCGG- -5' |
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22334 | 3' | -54.1 | NC_005045.1 | + | 12237 | 0.66 | 0.735003 |
Target: 5'- --gGUGAUGGUGGGc----CAGUGCCa -3' miRNA: 3'- ccaCGCUACCGCCUaugauGUCGCGG- -5' |
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22334 | 3' | -54.1 | NC_005045.1 | + | 13404 | 0.66 | 0.735003 |
Target: 5'- --aGCGuagGGCgcaucuuccguuGGAUGCUGCAuCGCCc -3' miRNA: 3'- ccaCGCua-CCG------------CCUAUGAUGUcGCGG- -5' |
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22334 | 3' | -54.1 | NC_005045.1 | + | 14302 | 0.72 | 0.393035 |
Target: 5'- aGUGCGAagcccaGGCGGAUuuga-GGCGCCg -3' miRNA: 3'- cCACGCUa-----CCGCCUAugaugUCGCGG- -5' |
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22334 | 3' | -54.1 | NC_005045.1 | + | 15394 | 0.68 | 0.601565 |
Target: 5'- cGG-GCcGUGGCGGAcgugUACgagcgagGCggGGCGCCg -3' miRNA: 3'- -CCaCGcUACCGCCU----AUGa------UG--UCGCGG- -5' |
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22334 | 3' | -54.1 | NC_005045.1 | + | 16586 | 0.66 | 0.702296 |
Target: 5'- --aGCGGgauugcucGGCaGGUGCU-CGGCGCCc -3' miRNA: 3'- ccaCGCUa-------CCGcCUAUGAuGUCGCGG- -5' |
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22334 | 3' | -54.1 | NC_005045.1 | + | 18743 | 1.15 | 0.00039 |
Target: 5'- uGGUGCGAUGGCGGAUACUACAGCGCCa -3' miRNA: 3'- -CCACGCUACCGCCUAUGAUGUCGCGG- -5' |
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22334 | 3' | -54.1 | NC_005045.1 | + | 20904 | 0.69 | 0.535128 |
Target: 5'- -cUGCGAUGGCGucucg-GCGGCGCa -3' miRNA: 3'- ccACGCUACCGCcuaugaUGUCGCGg -5' |
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22334 | 3' | -54.1 | NC_005045.1 | + | 21056 | 0.7 | 0.471452 |
Target: 5'- --cGCGAUGGCcaguugGCcgGCGGCGCCu -3' miRNA: 3'- ccaCGCUACCGccua--UGa-UGUCGCGG- -5' |
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22334 | 3' | -54.1 | NC_005045.1 | + | 21497 | 0.66 | 0.702296 |
Target: 5'- aGGaGCGAUGGCcGAUGCcACuGGCaCCg -3' miRNA: 3'- -CCaCGCUACCGcCUAUGaUG-UCGcGG- -5' |
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22334 | 3' | -54.1 | NC_005045.1 | + | 23358 | 0.72 | 0.374793 |
Target: 5'- gGGUcGgGAUGGCcaguUGCUGCGGCGCa -3' miRNA: 3'- -CCA-CgCUACCGccu-AUGAUGUCGCGg -5' |
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22334 | 3' | -54.1 | NC_005045.1 | + | 24499 | 0.66 | 0.690125 |
Target: 5'- uGGUGgucgaacUGGUGGCGGAggUACaGCAGgGUg -3' miRNA: 3'- -CCAC-------GCUACCGCCU--AUGaUGUCgCGg -5' |
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22334 | 3' | -54.1 | NC_005045.1 | + | 26711 | 0.68 | 0.579214 |
Target: 5'- cGGUGCcccuGGUGuGgGGGUGCaguucauggACGGCGCUg -3' miRNA: 3'- -CCACG----CUAC-CgCCUAUGa--------UGUCGCGG- -5' |
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22334 | 3' | -54.1 | NC_005045.1 | + | 26821 | 0.68 | 0.568103 |
Target: 5'- cGGgGCcuUGGUGGAgccggugGCcaugACAGCGCCg -3' miRNA: 3'- -CCaCGcuACCGCCUa------UGa---UGUCGCGG- -5' |
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22334 | 3' | -54.1 | NC_005045.1 | + | 28495 | 0.66 | 0.691235 |
Target: 5'- aGGUugGCGAUaucGCGG--GCaGCGGCGCCc -3' miRNA: 3'- -CCA--CGCUAc--CGCCuaUGaUGUCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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