miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22334 3' -54.1 NC_005045.1 + 26711 0.68 0.579214
Target:  5'- cGGUGCcccuGGUGuGgGGGUGCaguucauggACGGCGCUg -3'
miRNA:   3'- -CCACG----CUAC-CgCCUAUGa--------UGUCGCGG- -5'
22334 3' -54.1 NC_005045.1 + 26821 0.68 0.568103
Target:  5'- cGGgGCcuUGGUGGAgccggugGCcaugACAGCGCCg -3'
miRNA:   3'- -CCaCGcuACCGCCUa------UGa---UGUCGCGG- -5'
22334 3' -54.1 NC_005045.1 + 40663 0.69 0.546052
Target:  5'- cGGaGCaGAUGGUGGGUACgcCGGCGa- -3'
miRNA:   3'- -CCaCG-CUACCGCCUAUGauGUCGCgg -5'
22334 3' -54.1 NC_005045.1 + 20904 0.69 0.535128
Target:  5'- -cUGCGAUGGCGucucg-GCGGCGCa -3'
miRNA:   3'- ccACGCUACCGCcuaugaUGUCGCGg -5'
22334 3' -54.1 NC_005045.1 + 30960 0.7 0.502852
Target:  5'- -aUGCGAU-GCGGGgcgccgAgUACGGUGCCa -3'
miRNA:   3'- ccACGCUAcCGCCUa-----UgAUGUCGCGG- -5'
22334 3' -54.1 NC_005045.1 + 36040 0.7 0.49228
Target:  5'- cGGUGCGAaucucGGCgaagcccaGGGcACggcGCAGCGCCu -3'
miRNA:   3'- -CCACGCUa----CCG--------CCUaUGa--UGUCGCGG- -5'
22334 3' -54.1 NC_005045.1 + 21056 0.7 0.471452
Target:  5'- --cGCGAUGGCcaguugGCcgGCGGCGCCu -3'
miRNA:   3'- ccaCGCUACCGccua--UGa-UGUCGCGG- -5'
22334 3' -54.1 NC_005045.1 + 41067 0.7 0.461207
Target:  5'- cGUGCGGaGGCccuGGAggUGCguuaugccaccuUGCAGCGCCa -3'
miRNA:   3'- cCACGCUaCCG---CCU--AUG------------AUGUCGCGG- -5'
22334 3' -54.1 NC_005045.1 + 38749 0.71 0.441078
Target:  5'- --gGCGAUGGUGGAcuuaGCUucgccgcgcuguGCAGCGaCCa -3'
miRNA:   3'- ccaCGCUACCGCCUa---UGA------------UGUCGC-GG- -5'
22334 3' -54.1 NC_005045.1 + 31631 0.71 0.411845
Target:  5'- uGUGCu-UGGUcaaggGGAUACUugGGCGUCa -3'
miRNA:   3'- cCACGcuACCG-----CCUAUGAugUCGCGG- -5'
22334 3' -54.1 NC_005045.1 + 14302 0.72 0.393035
Target:  5'- aGUGCGAagcccaGGCGGAUuuga-GGCGCCg -3'
miRNA:   3'- cCACGCUa-----CCGCCUAugaugUCGCGG- -5'
22334 3' -54.1 NC_005045.1 + 23358 0.72 0.374793
Target:  5'- gGGUcGgGAUGGCcaguUGCUGCGGCGCa -3'
miRNA:   3'- -CCA-CgCUACCGccu-AUGAUGUCGCGg -5'
22334 3' -54.1 NC_005045.1 + 10111 0.75 0.250224
Target:  5'- cGGUGCGcAUGGCGuGGUgucccGCaGCGGgCGCCg -3'
miRNA:   3'- -CCACGC-UACCGC-CUA-----UGaUGUC-GCGG- -5'
22334 3' -54.1 NC_005045.1 + 18743 1.15 0.00039
Target:  5'- uGGUGCGAUGGCGGAUACUACAGCGCCa -3'
miRNA:   3'- -CCACGCUACCGCCUAUGAUGUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.