Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22335 | 5' | -54.1 | NC_005045.1 | + | 20934 | 0.66 | 0.654186 |
Target: 5'- --gGCCuGUGcuggcuGGCAguacAGGGCUGGAAGa -3' miRNA: 3'- uugCGGuCAC------UCGU----UCUCGACCUUCg -5' |
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22335 | 5' | -54.1 | NC_005045.1 | + | 32382 | 0.66 | 0.619547 |
Target: 5'- cAAgGCCGGUGAcguGguAGAccuGCUGGAcgagGGCa -3' miRNA: 3'- -UUgCGGUCACU---CguUCU---CGACCU----UCG- -5' |
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22335 | 5' | -54.1 | NC_005045.1 | + | 7384 | 0.67 | 0.596496 |
Target: 5'- gGAUGCCA--GAGCAuGAGCcGGggGg -3' miRNA: 3'- -UUGCGGUcaCUCGUuCUCGaCCuuCg -5' |
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22335 | 5' | -54.1 | NC_005045.1 | + | 10810 | 0.67 | 0.585015 |
Target: 5'- aGGCGCaGGUGA---GGAGCUGGAuguGCu -3' miRNA: 3'- -UUGCGgUCACUcguUCUCGACCUu--CG- -5' |
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22335 | 5' | -54.1 | NC_005045.1 | + | 28509 | 0.67 | 0.585015 |
Target: 5'- aAGCGCCAGggGAuGCuAGccGGC-GGAAGCg -3' miRNA: 3'- -UUGCGGUCa-CU-CGuUC--UCGaCCUUCG- -5' |
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22335 | 5' | -54.1 | NC_005045.1 | + | 39458 | 0.68 | 0.550871 |
Target: 5'- cGAgGCUGGUGuccAGCAuguacuGaAGCUGGAAGCc -3' miRNA: 3'- -UUgCGGUCAC---UCGUu-----C-UCGACCUUCG- -5' |
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22335 | 5' | -54.1 | NC_005045.1 | + | 40406 | 0.68 | 0.507462 |
Target: 5'- cACGCCGGUGAcgGCGAGGGUgccuuugcccgccucGGuGGCg -3' miRNA: 3'- uUGCGGUCACU--CGUUCUCGa--------------CCuUCG- -5' |
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22335 | 5' | -54.1 | NC_005045.1 | + | 15939 | 0.69 | 0.463472 |
Target: 5'- -cCGCCAGUGGauCAucGAGCUGGAcGCc -3' miRNA: 3'- uuGCGGUCACUc-GUu-CUCGACCUuCG- -5' |
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22335 | 5' | -54.1 | NC_005045.1 | + | 662 | 0.69 | 0.453045 |
Target: 5'- cAGCGCCAGgGAGguAGAccaGCacccaGGGAGCg -3' miRNA: 3'- -UUGCGGUCaCUCguUCU---CGa----CCUUCG- -5' |
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22335 | 5' | -54.1 | NC_005045.1 | + | 1848 | 0.7 | 0.422556 |
Target: 5'- -cCGCCAGUacgcuaccuGAGCAgcaaAGGGCgacuUGGGAGCc -3' miRNA: 3'- uuGCGGUCA---------CUCGU----UCUCG----ACCUUCG- -5' |
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22335 | 5' | -54.1 | NC_005045.1 | + | 42242 | 0.71 | 0.378293 |
Target: 5'- -cCGCCAGgaugcguagaauggGcAGCGAGGGCagGGAAGCc -3' miRNA: 3'- uuGCGGUCa-------------C-UCGUUCUCGa-CCUUCG- -5' |
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22335 | 5' | -54.1 | NC_005045.1 | + | 179 | 0.71 | 0.378293 |
Target: 5'- -cCGCCAGgaugcguagaauggGcAGCGAGGGCagGGAAGCc -3' miRNA: 3'- uuGCGGUCa-------------C-UCGUUCUCGa-CCUUCG- -5' |
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22335 | 5' | -54.1 | NC_005045.1 | + | 39695 | 0.71 | 0.34764 |
Target: 5'- cACGUC-GUGAGCAucGGcGGCUGGAAGg -3' miRNA: 3'- uUGCGGuCACUCGU--UC-UCGACCUUCg -5' |
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22335 | 5' | -54.1 | NC_005045.1 | + | 10673 | 0.73 | 0.282707 |
Target: 5'- cGCGUC-GUGGGCuaccguguGGAGCUGGAAGa -3' miRNA: 3'- uUGCGGuCACUCGu-------UCUCGACCUUCg -5' |
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22335 | 5' | -54.1 | NC_005045.1 | + | 24361 | 0.73 | 0.268052 |
Target: 5'- -gUGCCGGUGA---AGAGCUGGAGcGCa -3' miRNA: 3'- uuGCGGUCACUcguUCUCGACCUU-CG- -5' |
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22335 | 5' | -54.1 | NC_005045.1 | + | 27738 | 0.75 | 0.203839 |
Target: 5'- -uCGCUGGUGAGCuGGAGCUGaccAAGCa -3' miRNA: 3'- uuGCGGUCACUCGuUCUCGACc--UUCG- -5' |
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22335 | 5' | -54.1 | NC_005045.1 | + | 19038 | 1.09 | 0.000728 |
Target: 5'- gAACGCCAGUGAGCAAGAGCUGGAAGCc -3' miRNA: 3'- -UUGCGGUCACUCGUUCUCGACCUUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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