miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22336 5' -57.2 NC_005045.1 + 30368 0.66 0.544343
Target:  5'- -gUUGGCGcugaacUCGCGCAGggccuGGGCCGGg -3'
miRNA:   3'- uaGACCGCuca---GGUGCGUU-----UCCGGCC- -5'
22336 5' -57.2 NC_005045.1 + 21176 0.66 0.544343
Target:  5'- -aCUGuGCG-GU-CACGCAcGGGCCGa -3'
miRNA:   3'- uaGAC-CGCuCAgGUGCGUuUCCGGCc -5'
22336 5' -57.2 NC_005045.1 + 2932 0.66 0.512213
Target:  5'- -cCUGGCGGGUUCGUGguAgugGGcGCCGGc -3'
miRNA:   3'- uaGACCGCUCAGGUGCguU---UC-CGGCC- -5'
22336 5' -57.2 NC_005045.1 + 26429 0.66 0.512213
Target:  5'- -gCUGGCGuuGUCCggcgucACGUAAGuGGCCGu -3'
miRNA:   3'- uaGACCGCu-CAGG------UGCGUUU-CCGGCc -5'
22336 5' -57.2 NC_005045.1 + 11934 0.66 0.490194
Target:  5'- -cUUGGCGAcuucgagGUCCAC-CuucAGGCCGGc -3'
miRNA:   3'- uaGACCGCU-------CAGGUGcGuu-UCCGGCC- -5'
22336 5' -57.2 NC_005045.1 + 23880 0.67 0.479865
Target:  5'- --gUGGCaGGGUCCGCGUguugguuGAAGacGCCGGc -3'
miRNA:   3'- uagACCG-CUCAGGUGCG-------UUUC--CGGCC- -5'
22336 5' -57.2 NC_005045.1 + 42317 0.68 0.421258
Target:  5'- -gCUGGCGcugguAGcCCAcCGCAGGGcGCUGGg -3'
miRNA:   3'- uaGACCGC-----UCaGGU-GCGUUUC-CGGCC- -5'
22336 5' -57.2 NC_005045.1 + 254 0.68 0.421258
Target:  5'- -gCUGGCGcugguAGcCCAcCGCAGGGcGCUGGg -3'
miRNA:   3'- uaGACCGC-----UCaGGU-GCGUUUC-CGGCC- -5'
22336 5' -57.2 NC_005045.1 + 12023 0.68 0.384067
Target:  5'- --gUGGCGAGgu-GCGguaCAAGGGCCGGg -3'
miRNA:   3'- uagACCGCUCaggUGC---GUUUCCGGCC- -5'
22336 5' -57.2 NC_005045.1 + 40464 0.7 0.308709
Target:  5'- ---cGGUGAGUaCCGCaGCAcaGAGGCUGGc -3'
miRNA:   3'- uagaCCGCUCA-GGUG-CGU--UUCCGGCC- -5'
22336 5' -57.2 NC_005045.1 + 20888 1.07 0.000573
Target:  5'- cAUCUGGCGAGUCCACGCAAAGGCCGGc -3'
miRNA:   3'- -UAGACCGCUCAGGUGCGUUUCCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.